About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_027351-T1OVOCHYMASE-RELATED
OS493_027352-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_027353-T1
OS493_027354-T1
OS493_027355-T1
OS493_027356-T1
OS493_027357-T1
OS493_027358-T1
OS493_027359-T1REGULATOR OF CHROMOSOME CONDENSATION
OS493_027360-T1OVARIAN CARCINOMA ANTIGEN CA125-RELATED
OS493_027361-T1REGULATOR OF CHROMOSOME CONDENSATION
OS493_027362-T1
OS493_027363-T1
OS493_027364-T1
OS493_027365-T1REGULATOR OF CHROMOSOME CONDENSATION
OS493_027366-T1
OS493_027367-T1PROTEIN CBR-CLEC-78
OS493_027368-T1PENTRAXIN
OS493_027369-T1COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING
OS493_027370-T1
OS493_027373-T1FI04643P-RELATED
OS493_027374-T1
OS493_027375-T1
OS493_027376-T1
OS493_027377-T1C-TYPE LECTIN SUPERFAMILY MEMBER
OS493_027378-T1CXC DOMAIN-CONTAINING PROTEIN-RELATED
OS493_027379-T1CXC DOMAIN-CONTAINING PROTEIN-RELATED
OS493_027380-T1
OS493_027381-T1
OS493_027382-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_027383-T1
OS493_027384-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_027385-T1INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
OS493_027386-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_027387-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_027388-T1
OS493_027390-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_027391-T1
OS493_027393-T1
OS493_027394-T1
OS493_027395-T1
OS493_027396-T1
OS493_027397-T1
OS493_027398-T1
OS493_027399-T1
OS493_027400-T1
OS493_027401-T1
OS493_027402-T1
OS493_027403-T1
OS493_027404-T1
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