Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_027509-T1 | RIBONUCLEASES P/MRP PROTEIN SUBUNIT POP1 |
OS493_027510-T1 | NETRIN/LAMININ-RELATED |
OS493_027518-T1 | NETRIN/LAMININ-RELATED |
OS493_027519-T1 | NETRIN/LAMININ-RELATED |
OS493_027520-T1 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
OS493_027522-T1 | N-ACETYLGLUCOSAMINE-6-PHOSPHATE DEACETYLASE |
OS493_027523-T1 | TRIFUNCTIONAL ENZYME SUBUNIT ALPHA |
OS493_027524-T1 | |
OS493_027525-T1 | |
OS493_027526-T1 | TRANSIENT RECEPTOR POTENTIAL CHANNEL |
OS493_027527-T1 | MOLTING PROTEIN MLT-4 |
OS493_027528-T1 | RIBONUCLEASE H1 |
OS493_027529-T1 | ELONGIN-C |
OS493_027530-T1 | PROTEIN STPG4 |
OS493_027531-T1 | NEURENSIN 1-RELATED |
OS493_027532-T1 | REGULATOR-RELATED |
OS493_027533-T1 | REGULATOR-RELATED |
OS493_027534-T1 | |
OS493_027535-T1 | |
OS493_027536-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870) |
OS493_027537-T1 | DELETED IN LUNG AND ESOPHAGEAL CANCER PROTEIN 1 |
OS493_027538-T1 | |
OS493_027539-T1 | |
OS493_027540-T1 | |
OS493_027541-T1 | POLY A POLYMERASE CID PAP -RELATED |
OS493_027542-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H |
OS493_027543-T1 | FACTOR VIII-ASSOCIATED GENE 1 |
OS493_027544-T1 | TELOMERASE-BINDING PROTEIN P23 HSP90 CO-CHAPERONE |
OS493_027545-T1 | SELENOPROTEIN O |
OS493_027546-T1 | COSTARS FAMILY PROTEIN ABRACL |
OS493_027547-T1 | PROTEIN C7ORF21 |
OS493_027548-T1 | UNCHARACTERIZED |
OS493_027549-T1 | UNCHARACTERIZED |
OS493_027550-T1 | CATION EFFLUX PROTEIN/ ZINC TRANSPORTER |
OS493_027551-T1 | ATP-DEPENDENT RNA HELICASE |
OS493_027552-T1 | SERINE/THREONINE-PROTEIN KINASE |
OS493_027553-T1 | POLYCYSTIN FAMILY MEMBER |
OS493_027554-T1 | POLYCYSTIN FAMILY MEMBER |
OS493_027555-T1 | POLYCYSTIN-1 |
OS493_027556-T1 | KREMEN PROTEIN |
OS493_027557-T1 | MUCIN 4-RELATED |
OS493_027559-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
OS493_027560-T1 | STEROL REGULATORY ELEMENT-BINDING PROTEIN CLEAVAGE-ACTIVATING PROTEIN |
OS493_027561-T1 | STEROL REGULATORY ELEMENT-BINDING PROTEIN CLEAVAGE-ACTIVATING PROTEIN |
OS493_027562-T1 | STEROL REGULATORY ELEMENT-BINDING PROTEIN CLEAVAGE-ACTIVATING PROTEIN |
OS493_027563-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_027564-T1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
OS493_027565-T1 | APOLIPOPROTEIN L |
OS493_027566-T1 | APOLIPOPROTEIN L |
OS493_027567-T1 |