About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_027727-T1FORKHEAD BOX P, ISOFORM C
OS493_027728-T1
OS493_027729-T1FORKHEAD BOX PROTEIN
OS493_027730-T1FORKHEAD BOX PROTEIN
OS493_027731-T1SACCHAROPINE DEHYDROGENASE
OS493_027732-T1
OS493_027733-T1SACCHAROPINE DEHYDROGENASE
OS493_027734-T1
OS493_027735-T1
OS493_027736-T1
OS493_027737-T1PROTEIN-LYSINE N-METHYLTRANSFERASE METTL10
OS493_027738-T1
OS493_027739-T1
OS493_027740-T1SOLUTE CARRIER FAMILY 33 ACETYL-COA TRANSPORTER -RELATED
OS493_027741-T1
OS493_027742-T1TRANSIENT RECEPTOR POTENTIAL CHANNEL
OS493_027743-T1
OS493_027745-T1SODIUM-DEPENDENT GLUCOSE TRANSPORTER 1
OS493_027746-T1SODIUM-DEPENDENT GLUCOSE TRANSPORTER 1
OS493_027747-T1SODIUM-DEPENDENT GLUCOSE TRANSPORTER 1
OS493_027748-T1SODIUM-DEPENDENT GLUCOSE TRANSPORTER 1
OS493_027749-T1SODIUM-DEPENDENT GLUCOSE TRANSPORTER 1
OS493_027750-T1SODIUM-DEPENDENT GLUCOSE TRANSPORTER 1
OS493_027751-T1
OS493_027752-T1ALDEHYDE DEHYDROGENASE-RELATED
OS493_027753-T1PROTEIN BRICK1
OS493_027754-T1STABILIN
OS493_027755-T1
OS493_027756-T1
OS493_027757-T1RYBP AND YAF2-RELATED
OS493_027758-T1
OS493_027759-T1TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
OS493_027760-T1TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
OS493_027761-T1
OS493_027762-T1
OS493_027763-T1
OS493_027765-T1ACTIN
OS493_027766-T1ACTIN
OS493_027767-T1APOLIPOPROTEIN L
OS493_027768-T1ACTIN
OS493_027769-T1ACTIN
OS493_027770-T1
OS493_027771-T1RIBONUCLEASE H2 SUBUNIT A
OS493_027772-T1AMINO ACID TRANSPORTER
OS493_027773-T1AMINO ACID TRANSPORTER
OS493_027774-T1ANK_REP_REGION DOMAIN-CONTAINING PROTEIN
OS493_027775-T1
OS493_027776-T1AMINO ACID TRANSPORTER
OS493_027777-T1AMINO ACID TRANSPORTER
OS493_027778-T1INDOLEAMINE 2,3-DIOXYGENASE
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