About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_027779-T1
OS493_027780-T1TRANSMEMBRANE CHANNEL-RELATED
OS493_027781-T1TRANSMEMBRANE CHANNEL-RELATED
OS493_027782-T1RIBOSOMAL PROTEIN S6 KINASE
OS493_027783-T1PROTEIN KINASE C, MU
OS493_027784-T1
OS493_027785-T1
OS493_027786-T1
OS493_027787-T1
OS493_027788-T1
OS493_027789-T1
OS493_027790-T1
OS493_027791-T1PROTEIN CBG23806
OS493_027792-T1
OS493_027793-T1
OS493_027794-T1L-THREONINE ALDOLASE-RELATED
OS493_027795-T1L-THREONINE ALDOLASE-RELATED
OS493_027796-T1
OS493_027797-T1
OS493_027798-T130S 40S RIBOSOMAL PROTEIN
OS493_027799-T1GLYCOSYLTRANSFERASE STELLO1-RELATED
OS493_027800-T1RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
OS493_027801-T1ADP-RIBOSYLGLYCOHYDROLASE
OS493_027802-T1ADP-RIBOSYLGLYCOHYDROLASE
OS493_027803-T1
OS493_027804-T1TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
OS493_027805-T1
OS493_027806-T1TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
OS493_027807-T1UNCHARACTERIZED
OS493_027808-T1CENTAURIN-GAMMA-1A
OS493_027809-T1UNCHARACTERIZED
OS493_027810-T1
OS493_027811-T1
OS493_027812-T1ARF-GAP WITH DUAL PH DOMAIN-CONTAINING PROTEIN 1-LIKE PROTEIN
OS493_027813-T1N-ACETYLTRANSFERASE 9
OS493_027814-T1
OS493_027815-T1UNCHARACTERIZED
OS493_027816-T1
OS493_027817-T1
OS493_027818-T1
OS493_027819-T1-
OS493_027820-T1RIBONUCLEASE H2 SUBUNIT C
OS493_027821-T1
OS493_027822-T1
OS493_027823-T1
OS493_027824-T1
OS493_027825-T1FAS-BINDING FACTOR 1
OS493_027827-T1FAS-BINDING FACTOR 1
OS493_027828-T1THROMBOSPONDIN-TYPE LAMININ G DOMAIN AND EAR REPEAT-CONTAINING
OS493_027829-T1ACTIN
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