About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_027932-T1
OS493_027933-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_027934-T1HOMEOBOX PROTEIN NKX
OS493_027935-T1PROTEASE FAMILY M14 CARBOXYPEPTIDASE A,B
OS493_027937-T1
OS493_027938-T1LITHOSTATHINE
OS493_027939-T1LEUCOKININ RECEPTOR-RELATED
OS493_027940-T1LEUCOKININ RECEPTOR-RELATED
OS493_027941-T1LEUCOKININ RECEPTOR-RELATED
OS493_027942-T1LEUCOKININ RECEPTOR-RELATED
OS493_027943-T1
OS493_027944-T1LEUCOKININ RECEPTOR-RELATED
OS493_027945-T1RAPSYN-RELATED
OS493_027946-T1
OS493_027947-T1LD33695P
OS493_027948-T1RAPSYN-RELATED
OS493_027949-T1RAPSYN-RELATED
OS493_027950-T1
OS493_027951-T1LONG-CHAIN-FATTY-ACID--COA LIGASE
OS493_027952-T1GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2
OS493_027953-T1LIPOXYGENASE
OS493_027954-T1PROTEIN FAM227B
OS493_027955-T1
OS493_027956-T1PROTEIN FAM227B
OS493_027957-T1ALPHA- 1,3 -FUCOSYLTRANSFERASE
OS493_027959-T1
OS493_027960-T1
OS493_027961-T1
OS493_027962-T1
OS493_027963-T1
OS493_027964-T1
OS493_027965-T1
OS493_027966-T1AAA DOMAIN-CONTAINING
OS493_027967-T1CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED
OS493_027968-T1LEUCOKININ RECEPTOR-RELATED
OS493_027969-T1RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
OS493_027970-T1
OS493_027971-T1
OS493_027972-T1
OS493_027973-T1
OS493_027974-T1
OS493_027975-T1SNURPORTIN1 RNUT1 PROTEIN RNA, U TRANSPORTER 1
OS493_027976-T1TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
OS493_027977-T1
OS493_027978-T1
OS493_027979-T1REGULATOR-RELATED
OS493_027980-T1
OS493_027981-T1TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
OS493_027982-T1TETRATRICOPEPTIDE REPEAT PROTEIN (AFU_ORTHOLOGUE AFUA_6G03870)
OS493_027983-T1
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