Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_028097-T1 | TYROSINE-PROTEIN KINASE |
OS493_028098-T1 | |
OS493_028099-T1 | BATTENIN |
OS493_028100-T1 | |
OS493_028101-T1 | BATTENIN |
OS493_028102-T1 | FIBROBLAST GROWTH FACTOR |
OS493_028103-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_028104-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_028105-T1 | COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED |
OS493_028106-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_028107-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_028108-T1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
OS493_028109-T1 | DUAL SERINE/THREONINE AND TYROSINE PROTEIN KINASE |
OS493_028110-T1 | INTELECTIN |
OS493_028111-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_028112-T1 | POLYCYSTIN-1 |
OS493_028113-T1 | POLYCYSTIN-1 |
OS493_028114-T1 | POLYCYSTIN FAMILY MEMBER |
OS493_028115-T1 | POLYCYSTIN FAMILY MEMBER |
OS493_028116-T1 | POLYCYSTIN FAMILY MEMBER |
OS493_028117-T1 | |
OS493_028118-T1 | |
OS493_028119-T1 | |
OS493_028120-T1 | |
OS493_028121-T1 | |
OS493_028122-T1 | |
OS493_028123-T1 | PROTEIN SSUH2 HOMOLOG |
OS493_028124-T1 | |
OS493_028125-T1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
OS493_028126-T1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
OS493_028127-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_028128-T1 | |
OS493_028129-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN 6 |
OS493_028130-T1 | BTB/POZ DOMAIN-CONTAINING |
OS493_028131-T1 | BTB/POZ DOMAIN-CONTAINING |
OS493_028132-T1 | RAGULATOR COMPLEX PROTEIN LAMTOR5 |
OS493_028133-T1 | COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED |
OS493_028134-T1 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
OS493_028135-T1 | |
OS493_028136-T1 | |
OS493_028137-T1 | |
OS493_028138-T1 | ASPARAGINE SYNTHETASE |
OS493_028139-T1 | PROTEIN SIDEKICK |
OS493_028140-T1 | PROTEIN SIDEKICK |
OS493_028142-T1 | ACROSIN-RELATED |
OS493_028143-T1 | |
OS493_028144-T1 | |
OS493_028145-T1 | UPSET, ISOFORM A |
OS493_028146-T1 | |
OS493_028147-T1 | HEMK METHYLTRANSFERASE |