Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_028204-T1 | PROTEIN CLT2, CHLOROPLASTIC |
OS493_028205-T1 | PROTEIN CLT2, CHLOROPLASTIC |
OS493_028206-T1 | PROTEIN CLT2, CHLOROPLASTIC |
OS493_028207-T1 | |
OS493_028208-T1 | ADP-DEPENDENT GLUCOKINASE |
OS493_028210-T1 | PROTEIN G1-LIKE2 |
OS493_028211-T1 | |
OS493_028212-T1 | GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED |
OS493_028213-T1 | |
OS493_028214-T1 | MIS18-BINDING PROTEIN 1 |
OS493_028215-T1 | MIS18-BINDING PROTEIN 1 |
OS493_028216-T1 | CELL DEATH REGULATOR AVEN |
OS493_028217-T1 | UPF0669 PROTEIN C6ORF120 |
OS493_028218-T1 | SWAP-70 RECOMBINASE |
OS493_028219-T1 | |
OS493_028220-T1 | |
OS493_028221-T1 | |
OS493_028222-T1 | INACTIVE RHOMBOID PROTEIN |
OS493_028223-T1 | CRUMBS FAMILY MEMBER |
OS493_028224-T1 | |
OS493_028225-T1 | |
OS493_028226-T1 | MULTIPLE INOSITOL POLYPHOSPHATE PHOSPHATASE-RELATED |
OS493_028227-T1 | MULTIPLE INOSITOL POLYPHOSPHATE PHOSPHATASE-RELATED |
OS493_028228-T1 | PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED |
OS493_028229-T1 | PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED |
OS493_028230-T1 | |
OS493_028231-T1 | GAMMA-BUTYROBETAINE HYDROXYLASE-RELATED |
OS493_028232-T1 | PROLINE-RICH TRANSMEMBRANE PROTEIN 4-RELATED |
OS493_028233-T1 | UBIQUITIN LIGASE E3 ALPHA-RELATED |
OS493_028235-T1 | UBIQUITIN LIGASE E3 ALPHA-RELATED |
OS493_028236-T1 | UBIQUITIN LIGASE E3 ALPHA-RELATED |
OS493_028237-T1 | UBIQUITIN LIGASE E3 ALPHA-RELATED |
OS493_028238-T1 | TRANSMEMBRANE PROTEIN 198 FAMILY MEMBER |
OS493_028239-T1 | TRANSMEMBRANE PROTEIN 198 FAMILY MEMBER |
OS493_028240-T1 | PROTEIN CHURCHILL |
OS493_028241-T1 | |
OS493_028242-T1 | NADPH OXIDASE |
OS493_028243-T1 | |
OS493_028251-T1 | |
OS493_028252-T1 | |
OS493_028253-T1 | |
OS493_028254-T1 | PROLINE-RICH, LACRIMAL 1 |
OS493_028255-T1 | |
OS493_028256-T1 | |
OS493_028257-T1 | |
OS493_028258-T1 | |
OS493_028259-T1 | |
OS493_028260-T1 | |
OS493_028261-T1 | |
OS493_028262-T1 |