About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_028489-T1COLLAGEN ALPHA
OS493_028490-T1
OS493_028491-T1
OS493_028492-T1
OS493_028493-T1
OS493_028494-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_028495-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_028496-T1
OS493_028497-T1CONTACTIN 5
OS493_028498-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_028499-T1LEUCOKININ RECEPTOR-RELATED
OS493_028500-T1G-PROTEIN COUPLED RECEPTOR
OS493_028501-T1CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN
OS493_028502-T1
OS493_028503-T1EXPRESSED PROTEIN
OS493_028504-T1CHOLOYLGLYCINE HYDROLASE
OS493_028505-T1PENTRAXIN
OS493_028506-T1PENTRAXIN
OS493_028507-T1
OS493_028508-T1
OS493_028509-T1
OS493_028510-T1
OS493_028511-T1
OS493_028512-T1
OS493_028513-T1
OS493_028514-T1
OS493_028515-T1
OS493_028516-T1
OS493_028517-T1
OS493_028518-T1
OS493_028519-T1
OS493_028520-T1
OS493_028521-T1
OS493_028522-T1
OS493_028523-T1
OS493_028524-T1
OS493_028525-T1
OS493_028526-T1
OS493_028527-T1
OS493_028528-T1
OS493_028529-T1
OS493_028530-T1
OS493_028531-T1
OS493_028532-T1
OS493_028533-T1
OS493_028535-T1
OS493_028536-T1
OS493_028537-T1
OS493_028538-T1
OS493_028539-T1
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