About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_028432-T1DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED
OS493_028433-T13-HYDROXY-3-METHYLGLUTARYL COENZYME A SYNTHASE
OS493_028434-T1
OS493_028435-T1
OS493_028436-T1NEPHRIN
OS493_028437-T1URACIL-DNA GLYCOSYLASE
OS493_028438-T1NEPHRIN
OS493_028439-T1MULTICOPPER OXIDASE-RELATED
OS493_028440-T1
OS493_028441-T1EXPRESSED PROTEIN
OS493_028442-T1
OS493_028444-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_028445-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_028446-T1
OS493_028447-T1TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT BETA
OS493_028448-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_028449-T1OS07G0633600 PROTEIN
OS493_028450-T1
OS493_028451-T1OS07G0633600 PROTEIN
OS493_028452-T1OS07G0633600 PROTEIN
OS493_028453-T1GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 2
OS493_028456-T1LEISHMANOLYSIN-LIKE PEPTIDASE
OS493_028457-T1
OS493_028458-T1ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE
OS493_028459-T1T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN
OS493_028460-T1LIPASE
OS493_028461-T1LIPASE
OS493_028463-T1LIPASE
OS493_028464-T1
OS493_028465-T1
OS493_028466-T1LIPASE
OS493_028467-T1
OS493_028468-T1UBIQUITIN-CONJUGATING ENZYME E2
OS493_028469-T1PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED
OS493_028470-T1
OS493_028473-T1
OS493_028474-T1
OS493_028475-T1C5ORF35
OS493_028476-T1TIPA
OS493_028477-T1METASTASIS-ASSOCIATED PROTEIN AND MESODERM INDUCTION EARLY RESPONSE PROTEIN
OS493_028478-T1
OS493_028479-T1DYNEIN INTERMEDIATE CHAIN
OS493_028480-T1
OS493_028481-T1
OS493_028483-T1RADIAL SPOKE HEAD 1 HOMOLOG
OS493_028484-T1BASIGIN RELATED
OS493_028485-T1
OS493_028486-T1
OS493_028487-T1
OS493_028488-T1
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