Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_028761-T1 | |
OS493_028762-T1 | |
OS493_028763-T1 | |
OS493_028764-T1 | |
OS493_028765-T1 | |
OS493_028767-T1 | INTERFERON-INDUCED PROTEIN 44 |
OS493_028768-T1 | |
OS493_028769-T1 | |
OS493_028770-T1 | |
OS493_028772-T1 | (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME |
OS493_028773-T1 | RAS-RELATED PROTEIN RAB |
OS493_028774-T1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
OS493_028775-T1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 69 |
OS493_028776-T1 | |
OS493_028777-T1 | DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED |
OS493_028778-T1 | METHYLTRANSFERASE-RELATED |
OS493_028780-T1 | MALE-SPECIFIC LETHAL-1 PROTEIN |
OS493_028781-T1 | |
OS493_028782-T1 | |
OS493_028783-T1 | |
OS493_028784-T1 | SYNAPTOTAGMIN |
OS493_028785-T1 | |
OS493_028786-T1 | ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 2 |
OS493_028787-T1 | |
OS493_028788-T1 | |
OS493_028789-T1 | ACYL-MALONYL CONDENSING ENZYME-RELATED |
OS493_028790-T1 | ABL INTERACTOR FAMILY MEMBER |
OS493_028791-T1 | |
OS493_028792-T1 | ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK |
OS493_028793-T1 | UNCHARACTERIZED |
OS493_028794-T1 | UNCHARACTERIZED |
OS493_028795-T1 | P140CAP/SNIP-RELATED |
OS493_028796-T1 | P140CAP/SNIP-RELATED |
OS493_028797-T1 | HEXAMETHYLENE BISACETAMIDE INDUCIBLE 1 |
OS493_028798-T1 | LEO1 PROTEIN |
OS493_028799-T1 | EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN |
OS493_028800-T1 | NUDIX HYDROLASE |
OS493_028801-T1 | NUDIX HYDROLASE |
OS493_028802-T1 | TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6 |
OS493_028803-T1 | SYNAPTOTAGMIN |
OS493_028804-T1 | SYNAPTOTAGMIN |
OS493_028805-T1 | |
OS493_028806-T1 | (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME |
OS493_028807-T1 | TUFTELIN-INTERACTING PROTEIN 11-RELATED |
OS493_028808-T1 | GLYCEROL-3-PHOSPHATE DEHYDROGENASE |
OS493_028809-T1 | TRANSCRIPTIONAL REPRESSOR PROTEIN YY |
OS493_028810-T1 | BLOM7 |
OS493_028811-T1 | |
OS493_028812-T1 | HEME TRANSPORTER HRG1 |
OS493_028813-T1 | JUXTAPOSED WITH ANOTHER ZINC FINGER PROTEIN 1 |