About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_028761-T1
OS493_028762-T1
OS493_028763-T1
OS493_028764-T1
OS493_028765-T1
OS493_028767-T1INTERFERON-INDUCED PROTEIN 44
OS493_028768-T1
OS493_028769-T1
OS493_028770-T1
OS493_028772-T1(E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME
OS493_028773-T1RAS-RELATED PROTEIN RAB
OS493_028774-T1GUANINE NUCLEOTIDE EXCHANGE FACTOR
OS493_028775-T1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 69
OS493_028776-T1
OS493_028777-T1DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED
OS493_028778-T1METHYLTRANSFERASE-RELATED
OS493_028780-T1MALE-SPECIFIC LETHAL-1 PROTEIN
OS493_028781-T1
OS493_028782-T1
OS493_028783-T1
OS493_028784-T1SYNAPTOTAGMIN
OS493_028785-T1
OS493_028786-T1ANKYRIN REPEAT AND LEM DOMAIN-CONTAINING PROTEIN 2
OS493_028787-T1
OS493_028788-T1
OS493_028789-T1ACYL-MALONYL CONDENSING ENZYME-RELATED
OS493_028790-T1ABL INTERACTOR FAMILY MEMBER
OS493_028791-T1
OS493_028792-T1ENDOPLASMIC RETICULUM JUNCTION FORMATION PROTEIN LUNAPARK
OS493_028793-T1UNCHARACTERIZED
OS493_028794-T1UNCHARACTERIZED
OS493_028795-T1P140CAP/SNIP-RELATED
OS493_028796-T1P140CAP/SNIP-RELATED
OS493_028797-T1HEXAMETHYLENE BISACETAMIDE INDUCIBLE 1
OS493_028798-T1LEO1 PROTEIN
OS493_028799-T1EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN
OS493_028800-T1NUDIX HYDROLASE
OS493_028801-T1NUDIX HYDROLASE
OS493_028802-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
OS493_028803-T1SYNAPTOTAGMIN
OS493_028804-T1SYNAPTOTAGMIN
OS493_028805-T1
OS493_028806-T1(E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME
OS493_028807-T1TUFTELIN-INTERACTING PROTEIN 11-RELATED
OS493_028808-T1GLYCEROL-3-PHOSPHATE DEHYDROGENASE
OS493_028809-T1TRANSCRIPTIONAL REPRESSOR PROTEIN YY
OS493_028810-T1BLOM7
OS493_028811-T1
OS493_028812-T1HEME TRANSPORTER HRG1
OS493_028813-T1JUXTAPOSED WITH ANOTHER ZINC FINGER PROTEIN 1
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