Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_028866-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
OS493_028867-T1 | L-COA N-ACYLTRANSFERASE-RELATED |
OS493_028868-T1 | INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN |
OS493_028869-T1 | FIBROUS SHEATH CABYR-BINDING PROTEIN |
OS493_028871-T1 | AMINOTRANSFERASE |
OS493_028872-T1 | AMINOTRANSFERASE |
OS493_028873-T1 | |
OS493_028874-T1 | NEUROBLAST DIFFERENTIATION-ASSOCIATED PROTEIN AHNAK-LIKE PROTEIN |
OS493_028876-T1 | |
OS493_028877-T1 | |
OS493_028878-T1 | UNCHARACTERIZED |
OS493_028879-T1 | PROTEIN G1-LIKE2 |
OS493_028881-T1 | SIKE FAMILY MEMBER |
OS493_028882-T1 | |
OS493_028883-T1 | |
OS493_028884-T1 | DOCKING PROTEIN RELATED |
OS493_028885-T1 | |
OS493_028886-T1 | |
OS493_028888-T1 | BAND 7 PROTEIN-RELATED |
OS493_028889-T1 | BAND 7 PROTEIN-RELATED |
OS493_028890-T1 | |
OS493_028894-T1 | |
OS493_028895-T1 | - |
OS493_028896-T1 | T4-TYPE LYSOZYME 1-RELATED |
OS493_028898-T1 | KREV INTERACTION TRAPPED 1-RELATED |
OS493_028899-T1 | |
OS493_028900-T1 | |
OS493_028901-T1 | GH12955P |
OS493_028902-T1 | WD REPEAT-CONTAINING PROTEIN 81 |
OS493_028903-T1 | OPTIC ATROPHY 3 PROTEIN OPA3 |
OS493_028904-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
OS493_028905-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
OS493_028906-T1 | POLY [ADP-RIBOSE] POLYMERASE |
OS493_028907-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
OS493_028909-T1 | NEUROPEPTIDE Y RECEPTOR |
OS493_028910-T1 | |
OS493_028911-T1 | MONOCARBOXYLATE TRANSPORTER |
OS493_028912-T1 | |
OS493_028913-T1 | COLLAGEN ALPHA |
OS493_028914-T1 | F-BOX DOMAIN CONTAINING PROTEIN, EXPRESSED |
OS493_028915-T1 | COLLAGEN ALPHA |
OS493_028916-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_028917-T1 | |
OS493_028918-T1 | |
OS493_028919-T1 | UBIQUITIN THIOLESTERASE PROTEIN OTUB |
OS493_028921-T1 | RIBOSOMAL RNA METHYLTRANSFERASE |
OS493_028922-T1 | BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A |
OS493_028923-T1 | BROMODOMAIN ADJACENT TO ZINC FINGER DOMAIN PROTEIN 1A |
OS493_028925-T1 | LITHOSTATHINE |
OS493_028926-T1 | T-SNARE COILED-COIL HOMOLOGY DOMAIN-CONTAINING PROTEIN |