About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_011599-T1METALLOPROTEASE INHIBITOR
OS493_011600-T1METALLOPROTEASE INHIBITOR
OS493_011602-T1SYNAPSIN
OS493_011603-T1OS02G0815200 PROTEIN
OS493_011604-T1-
OS493_011605-T1MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN
OS493_011606-T1MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN
OS493_011607-T1MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN
OS493_011608-T1METALLOPROTEASE INHIBITOR
OS493_011609-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_011610-T1METALLOPROTEASE INHIBITOR
OS493_011611-T1METALLOPROTEASE INHIBITOR
OS493_011612-T1MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN
OS493_011613-T1MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN
OS493_011615-T1ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED
OS493_011616-T1RP42 RELATED
OS493_011617-T1CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED
OS493_011618-T1RNA RECOGNITION RRM/RNP DOMAIN
OS493_011619-T1DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE-RELATED
OS493_011620-T1SARCOGLYCAN
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