About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_029142-T1BLR6086 PROTEIN
OS493_029143-T1VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3B
OS493_029144-T1VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3B
OS493_029145-T1
OS493_029146-T1MYOTUBULARIN-RELATED
OS493_029147-T1POLYCOMB GROUP PROTEIN
OS493_029149-T1
OS493_029150-T1TRANSCRIPTION FACTOR GATA FAMILY MEMBER
OS493_029151-T1
OS493_029152-T1
OS493_029153-T1EG:EG0003.4 PROTEIN-RELATED
OS493_029154-T1IMPORTIN-7, 8, 11
OS493_029155-T1IMPORTIN-7, 8, 11
OS493_029156-T1IMPORTIN-7, 8, 11
OS493_029157-T1GEO11419P1
OS493_029158-T1COMM DOMAIN CONTAINING PROTEIN 5
OS493_029162-T1
OS493_029163-T1
OS493_029164-T1
OS493_029165-T1
OS493_029166-T1
OS493_029167-T1
OS493_029168-T1OTU DOMAIN CONTAINING PROTEIN
OS493_029169-T1
OS493_029170-T1
OS493_029171-T1
OS493_029172-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_029173-T1
OS493_029174-T1
OS493_029175-T1
OS493_029176-T1
OS493_029177-T1
OS493_029178-T1
OS493_029179-T1
OS493_029181-T1
OS493_029182-T1
OS493_029183-T1
OS493_029184-T1
OS493_029185-T1WD40 REPEAT DOMAIN 95
OS493_029187-T1
OS493_029188-T1WD40 REPEAT DOMAIN 95
OS493_029189-T1HOMEOBOX PROTEIN TRANSCRIPTION FACTORS
OS493_029190-T1
OS493_029191-T1
OS493_029192-T1SIMILAR TO CDNA SEQUENCE BC052040
OS493_029193-T13-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE
OS493_029194-T1
OS493_029195-T1THREE PRIME REPAIR EXONUCLEASE 1, 2
OS493_029196-T1
OS493_029197-T1
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