About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_029307-T1VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
OS493_029308-T1ATILLA, ISOFORM B-RELATED-RELATED
OS493_029309-T1LD08641P
OS493_029310-T1KNIRPS-RELATED PROTEIN-RELATED
OS493_029312-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_029313-T1
OS493_029314-T1TRANSMEMBRANE PROTEIN 163
OS493_029315-T1EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G
OS493_029316-T1CLASS IV SAM-BINDING METHYLTRANSFERASE-RELATED
OS493_029317-T1CLASS IV SAM-BINDING METHYLTRANSFERASE-RELATED
OS493_029318-T1
OS493_029319-T1
OS493_029320-T1FATTY-ACID AMIDE HYDROLASE
OS493_029321-T1VALYL-TRNA SYNTHETASES
OS493_029322-T1VALYL-TRNA SYNTHETASES
OS493_029323-T1VALYL-TRNA SYNTHETASES
OS493_029324-T1ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
OS493_029325-T1ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
OS493_029327-T1
OS493_029328-T1TFIIH, POLYPEPTIDE 4
OS493_029329-T1FI14130P
OS493_029330-T1PROTEIN-TYROSINE SULFOTRANSFERASE 2
OS493_029331-T1PALMITOYLTRANSFERASE ZDHHC16
OS493_029332-T1SECRETED PROTEIN-RELATED
OS493_029333-T1
OS493_029334-T1
OS493_029335-T1
OS493_029336-T1ATP-DEPENDENT DNA HELICASE
OS493_029338-T1
OS493_029339-T1ATP-DEPENDENT DNA HELICASE
OS493_029340-T1
OS493_029341-T1
OS493_029343-T1AMINOMETHYLTRANSFERASE
OS493_029344-T1SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS
OS493_029345-T1ENDOGLIN/TGF-BETA RECEPTOR TYPE III
OS493_029346-T1ENDOGLIN/TGF-BETA RECEPTOR TYPE III
OS493_029347-T1
OS493_029348-T1
OS493_029349-T1ENDOGLIN/TGF-BETA RECEPTOR TYPE III
OS493_029350-T1
OS493_029351-T1
OS493_029352-T1
OS493_029353-T1
OS493_029354-T1
OS493_029355-T1
OS493_029356-T1
OS493_029357-T1
OS493_029358-T1
OS493_029359-T1RAN GTPASE-ACTIVATING PROTEIN 1
OS493_029360-T1LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34
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