Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_029307-T1 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
OS493_029308-T1 | ATILLA, ISOFORM B-RELATED-RELATED |
OS493_029309-T1 | LD08641P |
OS493_029310-T1 | KNIRPS-RELATED PROTEIN-RELATED |
OS493_029312-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_029313-T1 | |
OS493_029314-T1 | TRANSMEMBRANE PROTEIN 163 |
OS493_029315-T1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G |
OS493_029316-T1 | CLASS IV SAM-BINDING METHYLTRANSFERASE-RELATED |
OS493_029317-T1 | CLASS IV SAM-BINDING METHYLTRANSFERASE-RELATED |
OS493_029318-T1 | |
OS493_029319-T1 | |
OS493_029320-T1 | FATTY-ACID AMIDE HYDROLASE |
OS493_029321-T1 | VALYL-TRNA SYNTHETASES |
OS493_029322-T1 | VALYL-TRNA SYNTHETASES |
OS493_029323-T1 | VALYL-TRNA SYNTHETASES |
OS493_029324-T1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
OS493_029325-T1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
OS493_029327-T1 | |
OS493_029328-T1 | TFIIH, POLYPEPTIDE 4 |
OS493_029329-T1 | FI14130P |
OS493_029330-T1 | PROTEIN-TYROSINE SULFOTRANSFERASE 2 |
OS493_029331-T1 | PALMITOYLTRANSFERASE ZDHHC16 |
OS493_029332-T1 | SECRETED PROTEIN-RELATED |
OS493_029333-T1 | |
OS493_029334-T1 | |
OS493_029335-T1 | |
OS493_029336-T1 | ATP-DEPENDENT DNA HELICASE |
OS493_029338-T1 | |
OS493_029339-T1 | ATP-DEPENDENT DNA HELICASE |
OS493_029340-T1 | |
OS493_029341-T1 | |
OS493_029343-T1 | AMINOMETHYLTRANSFERASE |
OS493_029344-T1 | SOLUTE CARRIER FAMILY 31 COPPER TRANSPORTERS |
OS493_029345-T1 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
OS493_029346-T1 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
OS493_029347-T1 | |
OS493_029348-T1 | |
OS493_029349-T1 | ENDOGLIN/TGF-BETA RECEPTOR TYPE III |
OS493_029350-T1 | |
OS493_029351-T1 | |
OS493_029352-T1 | |
OS493_029353-T1 | |
OS493_029354-T1 | |
OS493_029355-T1 | |
OS493_029356-T1 | |
OS493_029357-T1 | |
OS493_029358-T1 | |
OS493_029359-T1 | RAN GTPASE-ACTIVATING PROTEIN 1 |
OS493_029360-T1 | LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34 |