About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_029088-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_029089-T1NEUROTRANSMITTER GATED ION CHANNEL
OS493_029091-T1HAUS AUGMIN-LIKE COMPLEX SUBUNIT 2
OS493_029092-T1F-BOX DOMAIN CONTAINING PROTEIN, EXPRESSED
OS493_029093-T1ATAXIN 2-BINDING PROTEIN 1-RELATED
OS493_029094-T1
OS493_029095-T1PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASE
OS493_029096-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_029097-T1TBC1 DOMAIN FAMILY MEMBER 19
OS493_029098-T1
OS493_029099-T1TBC1 DOMAIN FAMILY MEMBER 19
OS493_029100-T1TBC1 DOMAIN FAMILY MEMBER 19
OS493_029101-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_029102-T1ATP-BINDING CASSETTE SUB-FAMILY C
OS493_029104-T1
OS493_029105-T1
OS493_029107-T1
OS493_029108-T1TBC1 DOMAIN FAMILY MEMBER 19
OS493_029109-T1
OS493_029110-T1SERINE/THREONINE-PROTEIN KINASE 16
OS493_029111-T1
OS493_029112-T1
OS493_029113-T1NUCLEAR PROTEIN MDM1
OS493_029114-T1BEIGE/BEACH-RELATED
OS493_029115-T1
OS493_029116-T1BEIGE/BEACH-RELATED
OS493_029117-T1BEIGE/BEACH-RELATED
OS493_029118-T1CELL FATE DETERMINING PROTEIN MAB21-RELATED
OS493_029119-T1BEIGE/BEACH-RELATED
OS493_029120-T1SEPTIN
OS493_029121-T1EF HAND DOMAIN FAMILY A1,A2-RELATED
OS493_029122-T1OPSIN
OS493_029123-T1OPSIN
OS493_029124-T1OPSIN
OS493_029125-T1IODOTHYRONINE DEIODINASE
OS493_029126-T1IODOTHYRONINE DEIODINASE
OS493_029127-T1IODOTHYRONINE DEIODINASE
OS493_029128-T1
OS493_029129-T1CARBOHYDRATE SULFOTRANSFERASE
OS493_029130-T1CARBOHYDRATE SULFOTRANSFERASE
OS493_029131-T1CARBOHYDRATE SULFOTRANSFERASE
OS493_029132-T1CARBOHYDRATE SULFOTRANSFERASE
OS493_029133-T1UBIQUITIN-PROTEIN LIGASE E3C
OS493_029134-T1
OS493_029135-T1TRANSLATION INITIATION FACTOR IF-2-RELATED
OS493_029137-T1TRANSLATION INITIATION FACTOR IF-2-RELATED
OS493_029138-T1BLR6086 PROTEIN
OS493_029139-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_029140-T1BLR6086 PROTEIN
OS493_029141-T1BLR6086 PROTEIN
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