Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_029469-T1 | RAD54-LIKE |
OS493_029470-T1 | |
OS493_029471-T1 | |
OS493_029472-T1 | |
OS493_029473-T1 | |
OS493_029474-T1 | |
OS493_029475-T1 | |
OS493_029476-T1 | LIPOXYGENASE |
OS493_029477-T1 | LIPOXYGENASE |
OS493_029478-T1 | - |
OS493_029479-T1 | WNT RELATED |
OS493_029480-T1 | |
OS493_029481-T1 | SOLUTE CARRIER FAMILY 17 |
OS493_029482-T1 | WNT RELATED |
OS493_029483-T1 | |
OS493_029484-T1 | GLUTATHIONE REDUCTASE |
OS493_029485-T1 | GLUTATHIONE REDUCTASE |
OS493_029486-T1 | ANTHRAX TOXIN RECEPTOR |
OS493_029487-T1 | F-BOX ONLY PROTEIN 33 |
OS493_029488-T1 | MITOGEN-ACTIVATED PROTEIN KINASE |
OS493_029489-T1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_029490-T1 | |
OS493_029491-T1 | UBIQUITIN-PROTEIN LIGASE E3A-RELATED |
OS493_029492-T1 | UNCHARACTERIZED FAM3 |
OS493_029493-T1 | FOLLISTATIN-RELATED |
OS493_029494-T1 | |
OS493_029495-T1 | DISCS LARGE |
OS493_029496-T1 | |
OS493_029497-T1 | |
OS493_029498-T1 | LIPIN |
OS493_029499-T1 | LIPIN |
OS493_029500-T1 | PAPILLOMAVIRUS REGULATORY FACTOR PRF-1 |
OS493_029501-T1 | ACETYLGLUCOSAMINYLTRANSFERASE |
OS493_029502-T1 | |
OS493_029503-T1 | |
OS493_029504-T1 | OROFACIAL CLEFT 1 CANDIDATE GENE 1 PROTEIN |
OS493_029505-T1 | PKSB |
OS493_029506-T1 | SERINE/THREONINE-PROTEIN KINASE PIM |
OS493_029507-T1 | SERINE/THREONINE-PROTEIN KINASE PIM |
OS493_029508-T1 | TGF-BETA FAMILY |
OS493_029509-T1 | SERINE/THREONINE-PROTEIN KINASE PIM |
OS493_029511-T1 | RAB FAMILY |
OS493_029512-T1 | UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX 14 KD PROTEIN |
OS493_029513-T1 | TETRATRICOPEPTIDE REPEAT PROTEIN 39 FAMILY MEMBER |
OS493_029514-T1 | |
OS493_029515-T1 | |
OS493_029516-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_029517-T1 | |
OS493_029518-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_029524-T1 | YTH YT521-B HOMOLOGY DOMAIN-CONTAINING |