About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_029592-T1
OS493_029593-T1HISTIDINOL PHOSPHATASE-RELATED
OS493_029594-T1
OS493_029596-T1CAPZ-INTERACTING PROTEIN AND RELATED PROTEINS
OS493_029597-T1
OS493_029598-T1PRENYLTRANSFERASES
OS493_029599-T1TRANSCRIPTIONAL REGULATOR
OS493_029600-T1
OS493_029601-T1B-CELL TRANSLOCATION GENE
OS493_029602-T1HIGH MOBILITY GROUP PROTEIN DSP1
OS493_029603-T1
OS493_029604-T1
OS493_029606-T1
OS493_029607-T1ZINC FINGER MYND DOMAIN CONTAINING PROTEIN 10
OS493_029608-T1
OS493_029609-T1AMINOPEPTIDASE O
OS493_029610-T1AMINOPEPTIDASE O
OS493_029611-T1OPSIN
OS493_029612-T140S RIBOSOMAL PROTEIN S3A
OS493_029613-T1
OS493_029614-T1UNCHARACTERIZED
OS493_029615-T1PROTEASE S8 TRIPEPTIDYL PEPTIDASE I CLN2
OS493_029616-T1PROTEASE S8 TRIPEPTIDYL PEPTIDASE I CLN2
OS493_029617-T1AMMONIUM TRANSPORTER
OS493_029618-T1
OS493_029619-T1AMMONIUM TRANSPORTER
OS493_029620-T1OVOCHYMASE-RELATED
OS493_029621-T1OVOCHYMASE-RELATED
OS493_029622-T1OVOCHYMASE-RELATED
OS493_029623-T1COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED
OS493_029624-T1OVOCHYMASE-RELATED
OS493_029625-T1OVOCHYMASE-RELATED
OS493_029626-T1OVOCHYMASE-RELATED
OS493_029627-T1OVOCHYMASE-RELATED
OS493_029628-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_029629-T1OVOCHYMASE-RELATED
OS493_029630-T1CUBILIN-LIKE PROTEIN
OS493_029631-T1OVOCHYMASE-RELATED
OS493_029632-T1OVOCHYMASE-RELATED
OS493_029633-T1OVOCHYMASE-RELATED
OS493_029634-T1RAB GTPASE-ACTIVATING PROTEIN 1-LIKE
OS493_029635-T1PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER
OS493_029636-T1PROTEIN PHOSPHATASE 2C
OS493_029637-T1KRUEPPEL-LIKE TRANSCRIPTION FACTOR
OS493_029638-T1KRUEPPEL-LIKE TRANSCRIPTION FACTOR
OS493_029639-T1UNCHARACTERIZED
OS493_029643-T1
OS493_029644-T1
OS493_029645-T1
OS493_029646-T1
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