About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_011904-T1UNCHARACTERIZED PROTEIN YJBQ-RELATED
OS493_011905-T1FUKUTIN RELATED PROTEIN
OS493_011906-T1FUKUTIN RELATED PROTEIN
OS493_011907-T1POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 2
OS493_011908-T1TEX261 PROTEIN
OS493_011909-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_011910-T1ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 53
OS493_011911-T1ADH DEHYDROGENASE [UBIQUINONE] 1 ALPHA SUBCOMPLEX ASSEMBLY FACTOR 2
OS493_011912-T1-
OS493_011913-T1-
OS493_011914-T1-
OS493_011915-T1-
OS493_011916-T1GLPR-RELATED TRANSCRIPTIONAL REPRESSOR
OS493_011917-T1DACTYLIN
OS493_011918-T1RAS-RELATED PROTEIN RAB
OS493_011919-T1HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN
OS493_011920-T1E3 UBIQUITIN-PROTEIN LIGASE TM129
OS493_011921-T1RAB9 EFFECTOR PROTEIN WITH KELCH MOTIFS
OS493_011922-T1TEL2 INTERACTING PROTEIN 1 TTI1 FAMILY MEMBER
OS493_011923-T1TEL2 INTERACTING PROTEIN 1 TTI1 FAMILY MEMBER
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