About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_029865-T1THYROTROPIN-RELEASING HORMONE RECEPTOR
OS493_029866-T1
OS493_029867-T1
OS493_029868-T1
OS493_029869-T1
OS493_029870-T1THYROTROPIN-RELEASING HORMONE RECEPTOR
OS493_029871-T1
OS493_029873-T1
OS493_029874-T1
OS493_029875-T1
OS493_029876-T1
OS493_029877-T1
OS493_029879-T15-HYDROXYTRYPTAMINE RECEPTOR
OS493_029880-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_029881-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_029882-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_029883-T1
OS493_029884-T1
OS493_029885-T1PR DOMAIN ZINC FINGER PROTEIN
OS493_029886-T1LIM DOMAIN KINASE 1
OS493_029887-T1LIM DOMAIN KINASE 1
OS493_029888-T1PR DOMAIN ZINC FINGER PROTEIN
OS493_029889-T1ASPARAGINE SYNTHETASE DOMAIN-CONTAINING PROTEIN 1
OS493_029890-T1ASPARAGINE SYNTHETASE DOMAIN-CONTAINING PROTEIN 1
OS493_029891-T1ARSENICAL PUMP-DRIVING ATPASE ARSENITE-TRANSLOCATING ATPASE
OS493_029892-T1CYCLIC NUCLEOTIDE PHOSPHODIESTERASE
OS493_029894-T1
OS493_029896-T1SNF2/RAD54 FAMILY MEMBER
OS493_029897-T1SOX TRANSCRIPTION FACTOR
OS493_029898-T1HISTONE H1
OS493_029899-T1DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT
OS493_029900-T1RETICULON-LIKE PROTEIN
OS493_029901-T1
OS493_029903-T1
OS493_029904-T1UBIQUITIN-LIKE DOMAIN-CONTAINING PROTEIN
OS493_029905-T1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 57
OS493_029906-T1AMMONIUM TRANSPORTER
OS493_029907-T1T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN
OS493_029908-T1MAKORIN-RELATED
OS493_029909-T1SPERMATOGENESIS ASSOCIATED 11-RELATED
OS493_029911-T1SNF2/RAD54 FAMILY MEMBER
OS493_029913-T1GREMLIN 1
OS493_029914-T1
OS493_029915-T1
OS493_029916-T1
OS493_029917-T1
OS493_029918-T1
OS493_029919-T1
OS493_029920-T1FIMBRIN/PLASTIN
OS493_029921-T1
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