About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.

Classification

Animalia (Kingdom); Cnidaria (Phylum); Anthozoa (Subphylum); Hexacorallia (Class); Scleractinia (Order); Vacatina (Suborder); Caryophylliidae (Family); Lophelia (Genus); Lophelia pertusa (Species)

Original Name

Madrepora pertusa Linnaeus, 1758

Key Reference Paper

1. Linnaeus C. Systema Naturae per regna tria naturae, secundum classes, ordines, genera, species; cum characteribus, differentiis, synonymis, locis[M]. apud JB Delamolliere, 1789. (Linnaeus et al., 1789)

Distribution

Nova Scotia south to New Jersey. Depth range 39-2775 m


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90 1,600/438.639.457.3737,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_012007-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_012008-T1TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
OS493_012009-T1RAB GTPASE-ACTIVATING PROTEIN 1-LIKE
OS493_012010-T1UNCHARACTERIZED
OS493_012011-T1-
OS493_012012-T1MITOCHONDRIA-EATING PROTEIN-RELATED
OS493_012013-T1ALPHA KINASE/ELONGATION FACTOR 2 KINASE
OS493_012014-T1C20ORF30 PROTEIN
OS493_012015-T1LIMBIN/ELLIS-VAN CREVELD PROTEIN
OS493_012016-T1BROMODOMAIN-CONTAINING PROTEIN 8
OS493_012018-T1SERINE/ARGININE RICH SPLICING FACTOR
OS493_012019-T1HISTONE RNA HAIRPIN-BINDING PROTEIN
OS493_012020-T1GH10160P
OS493_012021-T1PROLINE-RICH NUCLEAR RECEPTOR COACTIVATOR
OS493_012022-T1TELOMERIC REPEAT-BINDING FACTOR 2 TERF2
OS493_012023-T1-
OS493_012024-T1PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
OS493_012025-T1S -2-HYDROXY-ACID OXIDASE-RELATED
OS493_012026-T1S -2-HYDROXY-ACID OXIDASE-RELATED
OS493_012027-T1S -2-HYDROXY-ACID OXIDASE-RELATED
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