Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_030092-T1 | |
OS493_030093-T1 | EXONUCLEASE V |
OS493_030094-T1 | TRPL TRANSLOCATION DEFECT PROTEIN 14 |
OS493_030095-T1 | ARP2/3 COMPLEX 21 KD SUBUNIT |
OS493_030096-T1 | UNCHARACTERIZED |
OS493_030098-T1 | BCL7 RELATED |
OS493_030099-T1 | |
OS493_030100-T1 | REPLICATION FACTOR A 1, RFA1 |
OS493_030101-T1 | UNCHARACTERIZED |
OS493_030102-T1 | CRUMBS FAMILY MEMBER |
OS493_030103-T1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
OS493_030104-T1 | DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED |
OS493_030105-T1 | F-BOX DOMAIN CONTAINING PROTEIN, EXPRESSED |
OS493_030106-T1 | OLIGOPEPTIDE TRANSPORTER-RELATED |
OS493_030107-T1 | |
OS493_030108-T1 | |
OS493_030109-T1 | ACETOACETYL-COA SYNTHETASE |
OS493_030110-T1 | NITRILASE C965.09-RELATED |
OS493_030111-T1 | STERILE ALPHA MOTIF DOMAIN-CONTAINING PROTEIN 15 |
OS493_030112-T1 | RAN GTPASE |
OS493_030113-T1 | |
OS493_030115-T1 | PHOSPHOENOLPYRUVATE CARBOXYLASE |
OS493_030116-T1 | PROTEIN PHOSPHATASE |
OS493_030117-T1 | CALCIUM-TRANSPORTING ATPASE |
OS493_030118-T1 | CALCIUM-TRANSPORTING ATPASE |
OS493_030119-T1 | SODIUM/POTASSIUM-TRANSPORTING ATPASE SUBUNIT ALPHA |
OS493_030120-T1 | CALCIUM-TRANSPORTING ATPASE |
OS493_030121-T1 | CALCIUM-TRANSPORTING ATPASE |
OS493_030122-T1 | PROTEIN FAM220A |
OS493_030123-T1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
OS493_030125-T1 | IFT140/172-RELATED |
OS493_030126-T1 | IFT140/172-RELATED |
OS493_030127-T1 | IFT140/172-RELATED |
OS493_030128-T1 | KUNITZ-TYPE PROTEASE INHIBITOR-RELATED |
OS493_030129-T1 | UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE |
OS493_030130-T1 | |
OS493_030131-T1 | |
OS493_030132-T1 | |
OS493_030133-T1 | |
OS493_030134-T1 | TRPL TRANSLOCATION DEFECT PROTEIN 14 |
OS493_030135-T1 | TRPL TRANSLOCATION DEFECT PROTEIN 14 |
OS493_030136-T1 | |
OS493_030138-T1 | FLAVIN MONOAMINE OXIDASE |
OS493_030139-T1 | ANKYRIN REPEAT PROTEIN |
OS493_030140-T1 | MYOTROPHIN |
OS493_030141-T1 | |
OS493_030142-T1 | |
OS493_030143-T1 | |
OS493_030144-T1 | PENTRAXIN |
OS493_030145-T1 | PENTRAXIN |