Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_030264-T1 | |
OS493_030265-T1 | |
OS493_030266-T1 | RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF |
OS493_030267-T1 | UNCHARACTERIZED |
OS493_030268-T1 | |
OS493_030269-T1 | |
OS493_030270-T1 | ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER |
OS493_030273-T1 | ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER |
OS493_030274-T1 | ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER |
OS493_030275-T1 | HAUS AUGMIN-LIKE COMPLEX SUBUNIT 1 |
OS493_030276-T1 | C2H2 ZINC FINGER CGI-62-RELATED |
OS493_030277-T1 | |
OS493_030278-T1 | |
OS493_030279-T1 | |
OS493_030280-T1 | EXPRESSED PROTEIN |
OS493_030281-T1 | |
OS493_030282-T1 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
OS493_030283-T1 | |
OS493_030284-T1 | EXPRESSED PROTEIN |
OS493_030285-T1 | |
OS493_030286-T1 | |
OS493_030287-T1 | CYCLIN D1-BINDING PROTEIN 1 |
OS493_030288-T1 | UBIQUITIN-CONJUGATING ENZYME E2 |
OS493_030289-T1 | UPF0598 PROTEIN C8ORF82 |
OS493_030290-T1 | KATANIN P80 SUBUNIT |
OS493_030291-T1 | CORE-BINDING FACTOR, BETA SUBUNIT |
OS493_030292-T1 | UNCHARACTERIZED |
OS493_030293-T1 | UNCHARACTERIZED |
OS493_030294-T1 | DNA REPLICATION FACTOR CDT1 |
OS493_030295-T1 | |
OS493_030296-T1 | FORMIN HOMOLOGY 2 FAMILY MEMBER |
OS493_030298-T1 | FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD |
OS493_030300-T1 | |
OS493_030301-T1 | |
OS493_030302-T1 | PURPLE ACID PHOSPHATASE |
OS493_030303-T1 | |
OS493_030304-T1 | PURPLE ACID PHOSPHATASE |
OS493_030305-T1 | SOX TRANSCRIPTION FACTOR |
OS493_030306-T1 | HYPOTHETICAL PROTEIN LOC100359752 |
OS493_030307-T1 | RIKEN CDNA 4931406P16 GENE |
OS493_030308-T1 | THYROID RECEPTOR INTERACTING PROTEIN RELATED |
OS493_030309-T1 | CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 4 |
OS493_030310-T1 | RNA-BINDING MOTIF PROTEIN 14B |
OS493_030311-T1 | |
OS493_030312-T1 | |
OS493_030313-T1 | BENZIL REDUCTASE |
OS493_030314-T1 | PEPTIDE METHIONINE SULFOXIDE REDUCTASE |
OS493_030315-T1 | |
OS493_030316-T1 | BETA1,3-GALACTOSYLTRANSFERASE |
OS493_030317-T1 | BETA1,3-GALACTOSYLTRANSFERASE |