About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_030264-T1
OS493_030265-T1
OS493_030266-T1RAS GTPASE-ACTIVATING PROTEIN WITH IQ MOTIF
OS493_030267-T1UNCHARACTERIZED
OS493_030268-T1
OS493_030269-T1
OS493_030270-T1ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER
OS493_030273-T1ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER
OS493_030274-T1ADAPTOR COMPLEX SUBUNIT BETA FAMILY MEMBER
OS493_030275-T1HAUS AUGMIN-LIKE COMPLEX SUBUNIT 1
OS493_030276-T1C2H2 ZINC FINGER CGI-62-RELATED
OS493_030277-T1
OS493_030278-T1
OS493_030279-T1
OS493_030280-T1EXPRESSED PROTEIN
OS493_030281-T1
OS493_030282-T1NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED
OS493_030283-T1
OS493_030284-T1EXPRESSED PROTEIN
OS493_030285-T1
OS493_030286-T1
OS493_030287-T1CYCLIN D1-BINDING PROTEIN 1
OS493_030288-T1UBIQUITIN-CONJUGATING ENZYME E2
OS493_030289-T1UPF0598 PROTEIN C8ORF82
OS493_030290-T1KATANIN P80 SUBUNIT
OS493_030291-T1CORE-BINDING FACTOR, BETA SUBUNIT
OS493_030292-T1UNCHARACTERIZED
OS493_030293-T1UNCHARACTERIZED
OS493_030294-T1DNA REPLICATION FACTOR CDT1
OS493_030295-T1
OS493_030296-T1FORMIN HOMOLOGY 2 FAMILY MEMBER
OS493_030298-T1FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
OS493_030300-T1
OS493_030301-T1
OS493_030302-T1PURPLE ACID PHOSPHATASE
OS493_030303-T1
OS493_030304-T1PURPLE ACID PHOSPHATASE
OS493_030305-T1SOX TRANSCRIPTION FACTOR
OS493_030306-T1HYPOTHETICAL PROTEIN LOC100359752
OS493_030307-T1RIKEN CDNA 4931406P16 GENE
OS493_030308-T1THYROID RECEPTOR INTERACTING PROTEIN RELATED
OS493_030309-T1CONSERVED OLIGOMERIC GOLGI COMPLEX SUBUNIT 4
OS493_030310-T1RNA-BINDING MOTIF PROTEIN 14B
OS493_030311-T1
OS493_030312-T1
OS493_030313-T1BENZIL REDUCTASE
OS493_030314-T1PEPTIDE METHIONINE SULFOXIDE REDUCTASE
OS493_030315-T1
OS493_030316-T1BETA1,3-GALACTOSYLTRANSFERASE
OS493_030317-T1BETA1,3-GALACTOSYLTRANSFERASE
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