About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_030147-T1
OS493_030148-T1FYVE-FINGER-CONTAINING RAB5 EFFECTOR PROTEIN RABENOSYN-5-RELATED
OS493_030149-T1ARMADILLO REPEAT CONTAINING PROTEIN
OS493_030150-T1GEMIN2
OS493_030151-T1
OS493_030152-T1
OS493_030153-T1MUSKELIN
OS493_030154-T1
OS493_030155-T1
OS493_030156-T1
OS493_030157-T1
OS493_030158-T1
OS493_030159-T1
OS493_030160-T1
OS493_030161-T1VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
OS493_030162-T1VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
OS493_030163-T1
OS493_030173-T1
OS493_030174-T1MUSKELIN
OS493_030175-T1TRANSMEMBRANE PROTEIN ADIPOCYTE-ASSOCIATED 1
OS493_030176-T1COPINE
OS493_030177-T1PROTEIN BARK BEETLE
OS493_030178-T1
OS493_030179-T1TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE
OS493_030181-T1CADHERIN-87A
OS493_030182-T1TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE
OS493_030183-T1
OS493_030184-T1
OS493_030185-T1FAT ATYPICAL CADHERIN-RELATED
OS493_030186-T1TENEURIN AND N-ACETYLGLUCOSAMINE-1-PHOSPHODIESTER ALPHA-N-ACETYLGLUCOSAMINIDASE
OS493_030188-T1PROTEIN BARK BEETLE
OS493_030189-T1PROTEIN BARK BEETLE
OS493_030190-T1
OS493_030191-T1
OS493_030192-T1
OS493_030193-T1WOLFRAMIN
OS493_030194-T1WOLFRAMIN
OS493_030195-T1WOLFRAMIN
OS493_030196-T1LEUCINE AMINOPEPTIDASE-RELATED
OS493_030197-T1LEUCINE AMINOPEPTIDASE-RELATED
OS493_030198-T1LEUCINE AMINOPEPTIDASE-RELATED
OS493_030199-T1
OS493_030200-T1
OS493_030201-T1G-PROTEIN COUPLED RECEPTOR 124-LIKE PROTEIN
OS493_030202-T1G-PROTEIN COUPLED RECEPTOR 124-LIKE PROTEIN
OS493_030203-T1
OS493_030205-T1
OS493_030206-T1
OS493_030207-T1
OS493_030208-T1
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