About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_030318-T1BETA1,3-GALACTOSYLTRANSFERASE
OS493_030320-T1MAESTRO-RELATED HEAT DOMAIN-CONTAINING
OS493_030321-T1MAESTRO-RELATED HEAT DOMAIN-CONTAINING
OS493_030322-T1TYROSINE AMINOTRANSFERASE
OS493_030324-T1LEUCINE-RICH REPEAT-CONTAINING PROTEIN 73
OS493_030325-T1
OS493_030326-T1PROTEIN CBG11750-RELATED
OS493_030327-T1PROTEIN CBG11750-RELATED
OS493_030328-T1PROTEIN CBG11750-RELATED
OS493_030330-T1PROTEIN CBG11750-RELATED
OS493_030331-T1PROTEIN CBG11750-RELATED
OS493_030333-T1PROTEIN CBG11750-RELATED
OS493_030334-T1PROTEIN CBG11750-RELATED
OS493_030335-T1CYSTEINE DESULFURYLASE FAMILY MEMBER
OS493_030336-T1MONOCARBOXYLATE TRANSPORTER
OS493_030337-T1
OS493_030338-T1DED DOMAIN-CONTAINING PROTEIN
OS493_030339-T1DED DOMAIN-CONTAINING PROTEIN
OS493_030340-T1DOUBLECORTIN DOMAIN CONTAINING 2
OS493_030341-T1
OS493_030342-T1
OS493_030343-T1PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED
OS493_030344-T1ARP2/3 COMPLEX 20 KD SUBUNIT
OS493_030347-T1
OS493_030348-T1CCR4-NOT TRANSCRIPTION COMPLEX
OS493_030349-T1CCR4-NOT TRANSCRIPTION COMPLEX
OS493_030350-T1
OS493_030351-T1CCR4-NOT TRANSCRIPTION COMPLEX
OS493_030352-T1
OS493_030353-T1-
OS493_030354-T1-
OS493_030355-T1
OS493_030356-T1OPSIN
OS493_030357-T1
OS493_030358-T1
OS493_030359-T1
OS493_030360-T1
OS493_030361-T1
OS493_030362-T1
OS493_030363-T1INTEGRASE CATALYTIC DOMAIN-CONTAINING PROTEIN
OS493_030364-T1
OS493_030365-T1
OS493_030366-T1DUF3504 DOMAIN-CONTAINING PROTEIN
OS493_030367-T1EXPRESSED PROTEIN
OS493_030368-T1
OS493_030369-T1
OS493_030370-T1
OS493_030371-T1SPINDLIN
OS493_030372-T1E3 UBIQUITIN-PROTEIN LIGASE TOPORS
OS493_030373-T1
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