About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_030500-T1LITTLE ELONGATION COMPLEX SUBUNIT 2
OS493_030501-T1MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN
OS493_030502-T1
OS493_030503-T1
OS493_030504-T1
OS493_030505-T1
OS493_030506-T1UNCHARACTERIZED
OS493_030507-T1ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
OS493_030508-T1ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
OS493_030509-T1CUB DOMAIN-CONTAINING PROTEIN
OS493_030510-T1POLYCYSTIN-1
OS493_030511-T1POLYCYSTIN FAMILY MEMBER
OS493_030512-T1POLYCYSTIN FAMILY MEMBER
OS493_030513-T1POTE ANKYRIN DOMAIN
OS493_030515-T1ARP2/3 COMPLEX 34 KDA SUBUNIT
OS493_030516-T1SOLUTE CARRIER FAMILY 40 MEMBER
OS493_030517-T1
OS493_030518-T1
OS493_030519-T1REGULATOR OF MICROTUBULE DYNAMICS PROTEIN
OS493_030520-T1ATAXIA TELANGIECTASIA MUTATED ATM -RELATED
OS493_030521-T1ATAXIA TELANGIECTASIA MUTATED ATM -RELATED
OS493_030522-T1
OS493_030523-T1ATAXIA TELANGIECTASIA MUTATED ATM -RELATED
OS493_030524-T1
OS493_030525-T1ATAXIA TELANGIECTASIA MUTATED ATM -RELATED
OS493_030526-T1ATAXIA TELANGIECTASIA MUTATED ATM -RELATED
OS493_030527-T1ATAXIA TELANGIECTASIA MUTATED ATM -RELATED
OS493_030528-T1PROTEIN FAM221A-RELATED
OS493_030529-T1RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2
OS493_030530-T1
OS493_030531-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_030532-T1TYROSINE-PROTEIN PHOSPHATASE
OS493_030533-T1FIDIPIDINE
OS493_030534-T1E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED
OS493_030535-T1UPF0565 PROTEIN C2ORF69
OS493_030536-T1CARBOXYLESTERASE
OS493_030537-T1
OS493_030538-T1CARBOXYLESTERASE
OS493_030539-T1
OS493_030540-T1SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D
OS493_030541-T1
OS493_030542-T1
OS493_030543-T1CARBONYL REDUCTASE 1-RELATED
OS493_030544-T1CARBONYL REDUCTASE 1-RELATED
OS493_030545-T1UNCHARACTERIZED
OS493_030546-T1
OS493_030547-T1UBIQUITIN CARBOXYL-TERMINAL HYDROLASE
OS493_030549-T1TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II
OS493_030550-T1COLLAGEN ALPHA
OS493_030551-T1
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