Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_030500-T1 | LITTLE ELONGATION COMPLEX SUBUNIT 2 |
OS493_030501-T1 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN |
OS493_030502-T1 | |
OS493_030503-T1 | |
OS493_030504-T1 | |
OS493_030505-T1 | |
OS493_030506-T1 | UNCHARACTERIZED |
OS493_030507-T1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
OS493_030508-T1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
OS493_030509-T1 | CUB DOMAIN-CONTAINING PROTEIN |
OS493_030510-T1 | POLYCYSTIN-1 |
OS493_030511-T1 | POLYCYSTIN FAMILY MEMBER |
OS493_030512-T1 | POLYCYSTIN FAMILY MEMBER |
OS493_030513-T1 | POTE ANKYRIN DOMAIN |
OS493_030515-T1 | ARP2/3 COMPLEX 34 KDA SUBUNIT |
OS493_030516-T1 | SOLUTE CARRIER FAMILY 40 MEMBER |
OS493_030517-T1 | |
OS493_030518-T1 | |
OS493_030519-T1 | REGULATOR OF MICROTUBULE DYNAMICS PROTEIN |
OS493_030520-T1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
OS493_030521-T1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
OS493_030522-T1 | |
OS493_030523-T1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
OS493_030524-T1 | |
OS493_030525-T1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
OS493_030526-T1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
OS493_030527-T1 | ATAXIA TELANGIECTASIA MUTATED ATM -RELATED |
OS493_030528-T1 | PROTEIN FAM221A-RELATED |
OS493_030529-T1 | RING FINGER AND SWIM DOMAIN-CONTAINING PROTEIN 2 |
OS493_030530-T1 | |
OS493_030531-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_030532-T1 | TYROSINE-PROTEIN PHOSPHATASE |
OS493_030533-T1 | FIDIPIDINE |
OS493_030534-T1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
OS493_030535-T1 | UPF0565 PROTEIN C2ORF69 |
OS493_030536-T1 | CARBOXYLESTERASE |
OS493_030537-T1 | |
OS493_030538-T1 | CARBOXYLESTERASE |
OS493_030539-T1 | |
OS493_030540-T1 | SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D |
OS493_030541-T1 | |
OS493_030542-T1 | |
OS493_030543-T1 | CARBONYL REDUCTASE 1-RELATED |
OS493_030544-T1 | CARBONYL REDUCTASE 1-RELATED |
OS493_030545-T1 | UNCHARACTERIZED |
OS493_030546-T1 | |
OS493_030547-T1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
OS493_030549-T1 | TRANSFORMING GROWTH FACTOR-BETA RECEPTOR TYPE I AND II |
OS493_030550-T1 | COLLAGEN ALPHA |
OS493_030551-T1 |