About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_030665-T1FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED
OS493_030666-T1RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6
OS493_030667-T1
OS493_030668-T1
OS493_030669-T1
OS493_030670-T1SERYL-TRNA SYNTHETASE
OS493_030671-T1SERYL-TRNA SYNTHETASE
OS493_030672-T1CRYPTOCHROME
OS493_030673-T1CRYPTOCHROME
OS493_030674-T1ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
OS493_030675-T1ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED
OS493_030676-T1PSEUDOURIDYLATE SYNTHASE
OS493_030677-T1DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE
OS493_030678-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_030679-T1RIBONUCLEASE
OS493_030680-T1CYTOSKELETON-ASSOCIATED PROTEIN 2-LIKE
OS493_030681-T1
OS493_030682-T1
OS493_030683-T1INTELECTIN
OS493_030684-T1POLYCYSTIN-1
OS493_030685-T1POLYCYSTIN FAMILY MEMBER
OS493_030686-T1
OS493_030687-T1ATP-DEPENDENT RNA HELICASE DBP3
OS493_030688-T1SORTING NEXIN
OS493_030689-T1SORTING NEXIN
OS493_030690-T1NUCLEOSIDE DIPHOSPHATE KINASE
OS493_030691-T1NUCLEOSIDE DIPHOSPHATE KINASE
OS493_030692-T1FAT ATYPICAL CADHERIN-RELATED
OS493_030693-T1CADHERIN-23
OS493_030694-T1-
OS493_030695-T1ANOCTAMIN
OS493_030696-T1HISTIDYL-TRNA SYNTHETASE
OS493_030697-T1HISTIDYL-TRNA SYNTHETASE
OS493_030698-T1
OS493_030699-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_030700-T1CHITINASE
OS493_030701-T1CHITINASE
OS493_030702-T1CHITINASE
OS493_030704-T1
OS493_030705-T1
OS493_030706-T1
OS493_030707-T1
OS493_030708-T1DAP3-BINDING CELL DEATH ENHANCER 1
OS493_030709-T1
OS493_030710-T1LEUCYL-TRNA SYNTHETASE
OS493_030711-T1LEUCYL-TRNA SYNTHETASE
OS493_030712-T1LEUCYL-TRNA SYNTHETASE
OS493_030713-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_030714-T1LEUCYL-TRNA SYNTHETASE
OS493_030715-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
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