About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_030716-T1WW DOMAIN BINDING PROTEIN 4
OS493_030717-T1
OS493_030718-T1INTELECTIN
OS493_030719-T1
OS493_030720-T1INTELECTIN
OS493_030721-T1INTELECTIN
OS493_030722-T1WD-REPEAT PROTEIN-RELATED
OS493_030723-T1MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B
OS493_030724-T1
OS493_030725-T1LIM DOMAIN ONLY PROTEIN 7
OS493_030726-T1HSC70CB, ISOFORM G-RELATED
OS493_030727-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_030728-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_030729-T1
OS493_030730-T1
OS493_030731-T1TYROSINE-PROTEIN KINASE
OS493_030732-T1
OS493_030733-T1
OS493_030734-T1
OS493_030735-T1
OS493_030736-T1
OS493_030737-T1
OS493_030739-T1
OS493_030740-T1
OS493_030741-T1
OS493_030742-T1
OS493_030743-T1
OS493_030745-T1GAMMA-SECRETASE-ACTIVATING PROTEIN
OS493_030746-T1CILIA AND FLAGELLA-ASSOCIATED PROTEIN 58-RELATED
OS493_030747-T1CILIA AND FLAGELLA-ASSOCIATED PROTEIN 58-RELATED
OS493_030749-T1
OS493_030751-T1
OS493_030752-T1
OS493_030753-T1
OS493_030754-T1SEC24-RELATED PROTEIN
OS493_030755-T1EMILIN ELASTIN MICROFIBRIL INTERFACE-LOCATED PROTEIN ELASTIN MICROFIBRIL INTERFACER
OS493_030756-T1AMINOACYLASE-1
OS493_030757-T1
OS493_030758-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_030762-T1
OS493_030763-T1
OS493_030764-T1
OS493_030766-T1
OS493_030767-T1
OS493_030768-T1
OS493_030769-T1
OS493_030770-T1
OS493_030771-T1
OS493_030772-T1AAA-FAMILY ATPASE
OS493_030773-T1RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN
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