About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_030552-T1COLLAGEN ALPHA
OS493_030554-T1
OS493_030555-T1CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS
OS493_030556-T1CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS
OS493_030557-T1CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS
OS493_030558-T1CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS
OS493_030559-T1CIRCADIAN PROTEIN CLOCK/ARNT/BMAL/PAS
OS493_030560-T1
OS493_030561-T1CHOLINE/ETHANOALAMINE KINASE
OS493_030562-T160S RIBOSOMAL PROTEIN L27A
OS493_030563-T1TRANSCRIPTION INTERMEDIARY FACTOR
OS493_030564-T1OXYSTEROL-BINDING PROTEIN-RELATED
OS493_030566-T1
OS493_030567-T1
OS493_030568-T1
OS493_030569-T1OXYSTEROL-BINDING PROTEIN-RELATED
OS493_030570-T1OXYSTEROL-BINDING PROTEIN-RELATED
OS493_030571-T1OXYSTEROL-BINDING PROTEIN-RELATED
OS493_030572-T1MONOCARBOXYLATE TRANSPORTER
OS493_030573-T1VILLIN
OS493_030574-T1VILLIN
OS493_030575-T1ALPHA-PROTEIN KINASE VWKA
OS493_030576-T1
OS493_030577-T1
OS493_030578-T1MULTICOPPER OXIDASE-RELATED
OS493_030579-T1
OS493_030580-T1
OS493_030581-T1
OS493_030582-T1
OS493_030583-T1SRCR DOMAIN-CONTAINING PROTEIN
OS493_030585-T1SRCR DOMAIN-CONTAINING PROTEIN
OS493_030586-T1CONTACTIN 5
OS493_030587-T1
OS493_030588-T1
OS493_030589-T1MULTICOPPER OXIDASE-RELATED
OS493_030590-T1
OS493_030591-T1MULTICOPPER OXIDASE-RELATED
OS493_030592-T1
OS493_030593-T1
OS493_030594-T1
OS493_030595-T1F5/8 TYPE C DOMAIN-CONTAINING PROTEIN
OS493_030596-T1
OS493_030597-T1
OS493_030598-T1
OS493_030599-T1
OS493_030600-T1
OS493_030601-T1PHOSPHOMANNOMUTASE 45A
OS493_030603-T1HEAT SHOCK PROTEIN 90 FAMILY MEMBER
OS493_030604-T1
OS493_030607-T1
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