About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_030427-T1
OS493_030428-T1RING FINGER AND SRY DOMAIN-CONTAINING
OS493_030429-T1
OS493_030430-T1TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN
OS493_030431-T1
OS493_030432-T1
OS493_030433-T1
OS493_030434-T1
OS493_030435-T1
OS493_030436-T1
OS493_030437-T1SERINE-THREONINE PROTEIN KINASE
OS493_030439-T1FRINGE-RELATED
OS493_030440-T1ATP SYNTHASE MITOCHONDRIAL F1 COMPLEX ASSEMBLY FACTOR 2/ATP12 PROTEIN, MITOCHONDRIAL PRECURSOR
OS493_030441-T1
OS493_030442-T1
OS493_030443-T1
OS493_030444-T1PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
OS493_030445-T1
OS493_030446-T1
OS493_030447-T1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED
OS493_030448-T1ARFAPTIN-RELATED
OS493_030449-T1WD40 REPEAT PROTEIN
OS493_030450-T1UNCHARACTERIZED
OS493_030451-T1UNCHARACTERIZED
OS493_030452-T1ACTIN-RELATED PROTEIN 2/3 COMPLEX SUBUNIT 1
OS493_030453-T1
OS493_030454-T1KETIMINE REDUCTASE MU-CRYSTALLIN
OS493_030455-T1
OS493_030456-T1
OS493_030457-T1
OS493_030458-T1
OS493_030459-T1
OS493_030460-T1
OS493_030461-T1WD REPEAT PROTEIN 26-RELATED
OS493_030462-T1
OS493_030463-T1
OS493_030464-T1
OS493_030465-T1
OS493_030468-T1
OS493_030471-T1
OS493_030472-T1
OS493_030490-T1
OS493_030491-T1COLLAGEN ALPHA
OS493_030493-T1
OS493_030494-T1SI:CH211-266K2.1
OS493_030495-T1COLLAGEN ALPHA
OS493_030496-T1UNCHARACTERIZED
OS493_030497-T1COLLAGEN ALPHA
OS493_030498-T1
OS493_030499-T1CHONDROITIN SYNTHASE
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