About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_030608-T1PHOSPHOGLYCERATE KINASE
OS493_030609-T1PHOSPHOGLYCERATE KINASE
OS493_030610-T1PLEXIN
OS493_030611-T1PLEXIN
OS493_030612-T1
OS493_030613-T1F-BOX ONLY PROTEIN 33
OS493_030614-T1
OS493_030615-T1DYNEIN HEAVY CHAIN 1, AXONEMAL-LIKE PROTEIN
OS493_030616-T1DYNEIN HEAVY CHAIN
OS493_030617-T1DYNEIN HEAVY CHAIN
OS493_030618-T1DYNEIN HEAVY CHAIN
OS493_030620-T1
OS493_030624-T1
OS493_030625-T1
OS493_030626-T1COLLAGEN ALPHA
OS493_030627-T1ANTHRAX TOXIN RECEPTOR
OS493_030628-T1
OS493_030629-T1
OS493_030630-T1REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
OS493_030631-T1
OS493_030632-T1
OS493_030633-T1
OS493_030634-T1
OS493_030635-T1
OS493_030636-T1CYSTATIN
OS493_030637-T1CYSTEINE PROTEASE FAMILY C1-RELATED
OS493_030638-T1ZGC:174356
OS493_030639-T1ZGC:174356
OS493_030640-T1ADHESION G-PROTEIN COUPLED RECEPTOR
OS493_030641-T1
OS493_030642-T1
OS493_030643-T1ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN-RELATED
OS493_030644-T1METABOTROPIC GLUTAMATE RECEPTOR
OS493_030646-T1
OS493_030647-T1ACID PHOSPHATASE-RELATED
OS493_030648-T1HOMEOBOX PROTEIN EMX-RELATED
OS493_030649-T1SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D
OS493_030650-T1MAX DIMERIZATION, MAD
OS493_030651-T1
OS493_030653-T1
OS493_030654-T1SET DOMAIN PROTEINS
OS493_030655-T1SET DOMAIN PROTEINS
OS493_030656-T1SET DOMAIN PROTEINS
OS493_030657-T1SET DOMAIN PROTEINS
OS493_030659-T1HEXOKINASE
OS493_030660-T1TRANSCRIPTION INITIATION FACTOR TFIID
OS493_030661-T1
OS493_030662-T1
OS493_030663-T1TRANSCRIPTION INITIATION FACTOR TFIID
OS493_030664-T1TRANSCRIPTION INITIATION FACTOR TFIID
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