About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_030774-T1
OS493_030775-T1COLLAGEN ALPHA
OS493_030776-T1SI:DKEY-19B23.12-RELATED
OS493_030777-T1SI:DKEY-19B23.12-RELATED
OS493_030778-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_030780-T1
OS493_030781-T1
OS493_030782-T1COLLAGEN ALPHA
OS493_030783-T1COLLAGEN ALPHA
OS493_030784-T1RETINOL DEHYDROGENASE-RELATED
OS493_030785-T1
OS493_030786-T1COLLAGEN ALPHA
OS493_030788-T1COLLAGEN ALPHA
OS493_030789-T1
OS493_030790-T1COLLAGEN ALPHA
OS493_030791-T1ENDONUCLEASE RELATED
OS493_030792-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_030793-T1SEROLOGICALLY DEFINED COLON CANCER ANTIGEN 8
OS493_030794-T1
OS493_030795-T1
OS493_030796-T1
OS493_030797-T1
OS493_030798-T1FACIOGENITAL DYSPLASIA PROTEIN
OS493_030799-T1
OS493_030800-T1
OS493_030803-T1
OS493_030804-T1
OS493_030805-T1TYROSINASE FAMILY MEMBER
OS493_030806-T1
OS493_030807-T1
OS493_030808-T1
OS493_030809-T1THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED
OS493_030810-T1NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER
OS493_030811-T1THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED
OS493_030812-T1
OS493_030813-T1
OS493_030814-T1BOULE-RELATED
OS493_030815-T1
OS493_030816-T1NUCLEAR PORE COMPLEX PROTEIN SEC13 / SEH1 FAMILY MEMBER
OS493_030820-T1
OS493_030821-T1
OS493_030822-T1BOULE-RELATED
OS493_030823-T1PHOSPHOLIPASE B-RELATED
OS493_030824-T1BOULE-RELATED
OS493_030825-T1
OS493_030826-T1
OS493_030827-T1RNA-DEPENDENT RNA POLYMERASE
OS493_030830-T1
OS493_030832-T1
OS493_030833-T1
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