About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_029709-T1
OS493_029710-T1PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE
OS493_029711-T1PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE
OS493_029712-T1
OS493_029713-T1
OS493_029714-T1PHYTANOYL-COA ALPHA-HYDROXYLASE
OS493_029715-T1PHYTANOYL-COA ALPHA-HYDROXYLASE
OS493_029716-T1
OS493_029717-T1
OS493_029718-T1CALCINEURIN-LIKE METALLO-PHOSPHOESTERASE SUPERFAMILY PROTEIN
OS493_029719-T1EBNA2 BINDING PROTEIN P100
OS493_029720-T1HOMEO BOX HB9 LIKE A-RELATED
OS493_029721-T1ANKYRIN REPEAT PROTEIN
OS493_029722-T1ANKYRIN REPEAT-CONTAINING
OS493_029723-T1FUKUTIN RELATED PROTEIN
OS493_029724-T1RAB GTPASE-ACTIVATING PROTEIN 1-LIKE
OS493_029725-T1ACYLOXYACYL HYDROLASE
OS493_029726-T1ACYLOXYACYL HYDROLASE
OS493_029727-T1
OS493_029728-T1
OS493_029729-T1
OS493_029730-T1
OS493_029732-T1
OS493_029733-T1MONOCARBOXYLATE TRANSPORTER
OS493_029734-T1
OS493_029735-T1MONOCARBOXYLATE TRANSPORTER
OS493_029736-T1
OS493_029737-T1PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 32
OS493_029738-T1LYSOSOMAL ACID LIPASE-RELATED
OS493_029739-T1LYSOSOMAL ACID LIPASE-RELATED
OS493_029740-T1LYSOSOMAL ACID LIPASE-RELATED
OS493_029741-T1LIM ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED
OS493_029742-T1NG37
OS493_029743-T1
OS493_029744-T1
OS493_029747-T1TNF RECEPTOR ASSOCIATED FACTOR
OS493_029748-T1
OS493_029749-T1
OS493_029750-T1RNA-DEPENDENT RNA POLYMERASE
OS493_029751-T1
OS493_029752-T1
OS493_029753-T1NUCLEAR PORE COMPLEX PROTEIN NUP155
OS493_029754-T1
OS493_029755-T1
OS493_029756-T1
OS493_029757-T1
OS493_029758-T1
OS493_029759-T1
OS493_029760-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
OS493_029761-T1TRACE AMINE-ASSOCIATED RECEPTOR 19N-RELATED
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