About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_029412-T1TRANSMEMBRANE PROTEIN 121B
OS493_029413-T1TRANSMEMBRANE PROTEIN 121B
OS493_029414-T1TRANSMEMBRANE PROTEIN 121B
OS493_029415-T1CULTURE SPECIFIC PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G00130)-RELATED
OS493_029416-T1TRANSMEMBRANE PROTEIN 121B
OS493_029417-T1TRANSMEMBRANE PROTEIN 121B
OS493_029418-T1PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED
OS493_029419-T1NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_029420-T1
OS493_029421-T1UNCHARACTERIZED
OS493_029422-T1
OS493_029423-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_029424-T1EGF-LIKE DOMAIN-CONTAINING PROTEIN
OS493_029425-T1ZINC FINGER PROTEIN
OS493_029426-T1EXPRESSED PROTEIN
OS493_029427-T1
OS493_029429-T1ZNF44 PROTEIN
OS493_029431-T1
OS493_029432-T1
OS493_029433-T1
OS493_029434-T1NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING
OS493_029435-T1U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3
OS493_029436-T1
OS493_029437-T1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED
OS493_029438-T1DIHYDROANTICAPSIN 7-DEHYDROGENASE
OS493_029439-T1CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 5
OS493_029440-T1POTASSIUM CHANNEL, SUBFAMILY K
OS493_029441-T1CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 5
OS493_029442-T1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED
OS493_029443-T1
OS493_029444-T1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED
OS493_029445-T1BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED
OS493_029446-T1OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR
OS493_029447-T1ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_029450-T1PROPERDIN
OS493_029451-T1
OS493_029452-T1
OS493_029453-T1
OS493_029454-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_029455-T1TYROSINE-PROTEIN KINASE RECEPTOR
OS493_029456-T1MULTICOPPER OXIDASE-RELATED
OS493_029457-T1PROPERDIN
OS493_029458-T1MULTICOPPER OXIDASE-RELATED
OS493_029459-T1HMG BOX-CONTAINING PROTEIN 1
OS493_029460-T1
OS493_029462-T1UBIQUITIN LIGASE SPECIFICITY FACTOR/HREP PROTEIN
OS493_029463-T1RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY
OS493_029465-T1G PROTEIN-COUPLED RECEPTOR
OS493_029466-T1RAD54-LIKE
OS493_029468-T1RAD54-LIKE
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