Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_029412-T1 | TRANSMEMBRANE PROTEIN 121B |
OS493_029413-T1 | TRANSMEMBRANE PROTEIN 121B |
OS493_029414-T1 | TRANSMEMBRANE PROTEIN 121B |
OS493_029415-T1 | CULTURE SPECIFIC PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G00130)-RELATED |
OS493_029416-T1 | TRANSMEMBRANE PROTEIN 121B |
OS493_029417-T1 | TRANSMEMBRANE PROTEIN 121B |
OS493_029418-T1 | PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED |
OS493_029419-T1 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_029420-T1 | |
OS493_029421-T1 | UNCHARACTERIZED |
OS493_029422-T1 | |
OS493_029423-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_029424-T1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
OS493_029425-T1 | ZINC FINGER PROTEIN |
OS493_029426-T1 | EXPRESSED PROTEIN |
OS493_029427-T1 | |
OS493_029429-T1 | ZNF44 PROTEIN |
OS493_029431-T1 | |
OS493_029432-T1 | |
OS493_029433-T1 | |
OS493_029434-T1 | NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING |
OS493_029435-T1 | U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3 |
OS493_029436-T1 | |
OS493_029437-T1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED |
OS493_029438-T1 | DIHYDROANTICAPSIN 7-DEHYDROGENASE |
OS493_029439-T1 | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 5 |
OS493_029440-T1 | POTASSIUM CHANNEL, SUBFAMILY K |
OS493_029441-T1 | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 5 |
OS493_029442-T1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED |
OS493_029443-T1 | |
OS493_029444-T1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED |
OS493_029445-T1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED |
OS493_029446-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_029447-T1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_029450-T1 | PROPERDIN |
OS493_029451-T1 | |
OS493_029452-T1 | |
OS493_029453-T1 | |
OS493_029454-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_029455-T1 | TYROSINE-PROTEIN KINASE RECEPTOR |
OS493_029456-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_029457-T1 | PROPERDIN |
OS493_029458-T1 | MULTICOPPER OXIDASE-RELATED |
OS493_029459-T1 | HMG BOX-CONTAINING PROTEIN 1 |
OS493_029460-T1 | |
OS493_029462-T1 | UBIQUITIN LIGASE SPECIFICITY FACTOR/HREP PROTEIN |
OS493_029463-T1 | RAS, DI-RAS, AND RHEB FAMILY MEMBERS OF SMALL GTPASE SUPERFAMILY |
OS493_029465-T1 | G PROTEIN-COUPLED RECEPTOR |
OS493_029466-T1 | RAD54-LIKE |
OS493_029468-T1 | RAD54-LIKE |