About Lophelia pertusa

Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lophelia pertusaCnidariaDesmophyllum pertusum, deep-sea coralHydrothermal vent50-3,600Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442)174260

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Loph_1.0556.9MbScaffold2023JAPMOT01Lehigh UniversityPRJNA90394988.90%37,484

References
TitleJournalPubmed ID
Genome assembly of the deep-sea coral Lophelia pertusaGigaByte36935863

Gene Information

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Gene IDDescription
OS493_029361-T1LYSOPHOSPHOLIPASE-RELATED
OS493_029362-T139S RIBOSOMAL PROTEIN L46, MITOCHONDRIAL PRECURSOR-RELATED
OS493_029363-T1CXXC-TYPE ZINC FINGER PROTEIN 1
OS493_029364-T1
OS493_029365-T1
OS493_029366-T1
OS493_029367-T1RNA-BINDING PROTEIN
OS493_029368-T1RNA-BINDING PROTEIN
OS493_029369-T1PHOSPHOLIPASE B-RELATED
OS493_029370-T1BOULE-RELATED
OS493_029371-T1PROTEIN CBG13728
OS493_029372-T1PROTEIN CBG13728
OS493_029373-T1OTU DOMAIN CONTAINING PROTEIN
OS493_029374-T13-5 EXONUCLEASE
OS493_029375-T1MITOGEN-ACTIVATED PROTEIN KINASE
OS493_029376-T1TRNA-DIHYDROURIDINE SYNTHASE
OS493_029378-T1
OS493_029379-T1VILLIN
OS493_029380-T1
OS493_029381-T1
OS493_029382-T1TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED
OS493_029383-T1ZINC FINGER AND BTB DOMAIN-CONTAINING
OS493_029384-T1KRAB DOMAIN C2H2 ZINC FINGER
OS493_029385-T1PENICILLIN-BINDING PROTEIN
OS493_029386-T1PENICILLIN-BINDING PROTEIN
OS493_029387-T1PENICILLIN-BINDING PROTEIN
OS493_029388-T1PENICILLIN-BINDING PROTEIN
OS493_029389-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_029390-T1
OS493_029391-T15-HYDROXYTRYPTAMINE RECEPTOR
OS493_029392-T1CARBOHYDRATE SULFOTRANSFERASE
OS493_029393-T1HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR
OS493_029394-T1TYROSINASE FAMILY MEMBER
OS493_029395-T1TYROSINASE FAMILY MEMBER
OS493_029396-T1COLLAGEN ALPHA
OS493_029397-T1
OS493_029398-T1COLLAGEN ALPHA
OS493_029399-T1NOTCH LIGAND FAMILY MEMBER
OS493_029400-T1
OS493_029401-T1UNCHARACTERIZED
OS493_029402-T1COLLAGEN ALPHA
OS493_029403-T1UNCHARACTERIZED
OS493_029404-T1COLLAGEN ALPHA
OS493_029405-T1COLLAGEN ALPHA
OS493_029406-T1
OS493_029407-T1TYROSINASE FAMILY MEMBER
OS493_029408-T1TRANSMEMBRANE PROTEIN 121B
OS493_029409-T1TRANSMEMBRANE PROTEIN 121B
OS493_029410-T1TRANSMEMBRANE PROTEIN 121B
OS493_029411-T1TRANSMEMBRANE PROTEIN 121B
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