Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_029361-T1 | LYSOPHOSPHOLIPASE-RELATED |
OS493_029362-T1 | 39S RIBOSOMAL PROTEIN L46, MITOCHONDRIAL PRECURSOR-RELATED |
OS493_029363-T1 | CXXC-TYPE ZINC FINGER PROTEIN 1 |
OS493_029364-T1 | |
OS493_029365-T1 | |
OS493_029366-T1 | |
OS493_029367-T1 | RNA-BINDING PROTEIN |
OS493_029368-T1 | RNA-BINDING PROTEIN |
OS493_029369-T1 | PHOSPHOLIPASE B-RELATED |
OS493_029370-T1 | BOULE-RELATED |
OS493_029371-T1 | PROTEIN CBG13728 |
OS493_029372-T1 | PROTEIN CBG13728 |
OS493_029373-T1 | OTU DOMAIN CONTAINING PROTEIN |
OS493_029374-T1 | 3-5 EXONUCLEASE |
OS493_029375-T1 | MITOGEN-ACTIVATED PROTEIN KINASE |
OS493_029376-T1 | TRNA-DIHYDROURIDINE SYNTHASE |
OS493_029378-T1 | |
OS493_029379-T1 | VILLIN |
OS493_029380-T1 | |
OS493_029381-T1 | |
OS493_029382-T1 | TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED |
OS493_029383-T1 | ZINC FINGER AND BTB DOMAIN-CONTAINING |
OS493_029384-T1 | KRAB DOMAIN C2H2 ZINC FINGER |
OS493_029385-T1 | PENICILLIN-BINDING PROTEIN |
OS493_029386-T1 | PENICILLIN-BINDING PROTEIN |
OS493_029387-T1 | PENICILLIN-BINDING PROTEIN |
OS493_029388-T1 | PENICILLIN-BINDING PROTEIN |
OS493_029389-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_029390-T1 | |
OS493_029391-T1 | 5-HYDROXYTRYPTAMINE RECEPTOR |
OS493_029392-T1 | CARBOHYDRATE SULFOTRANSFERASE |
OS493_029393-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_029394-T1 | TYROSINASE FAMILY MEMBER |
OS493_029395-T1 | TYROSINASE FAMILY MEMBER |
OS493_029396-T1 | COLLAGEN ALPHA |
OS493_029397-T1 | |
OS493_029398-T1 | COLLAGEN ALPHA |
OS493_029399-T1 | NOTCH LIGAND FAMILY MEMBER |
OS493_029400-T1 | |
OS493_029401-T1 | UNCHARACTERIZED |
OS493_029402-T1 | COLLAGEN ALPHA |
OS493_029403-T1 | UNCHARACTERIZED |
OS493_029404-T1 | COLLAGEN ALPHA |
OS493_029405-T1 | COLLAGEN ALPHA |
OS493_029406-T1 | |
OS493_029407-T1 | TYROSINASE FAMILY MEMBER |
OS493_029408-T1 | TRANSMEMBRANE PROTEIN 121B |
OS493_029409-T1 | TRANSMEMBRANE PROTEIN 121B |
OS493_029410-T1 | TRANSMEMBRANE PROTEIN 121B |
OS493_029411-T1 | TRANSMEMBRANE PROTEIN 121B |