Lophelia pertusa is a cold-water coral that grows in the deep waters throughout the North Atlantic ocean, as well as parts of the Caribbean Sea and Alboran Sea. Although their reefs are home to a diverse community, the species is extremely slow growing and may be harmed by destructive fishing practices, or oil exploration and extraction. They does not contain zooxanthellae, the symbiotic algae which lives inside most tropical reef building corals. Lophelia lives at a temperature range from about 4–12 °C and at depths between 80 metres and over 3,000 metres, but most commonly at depths of 200–1,000 metres, where there is no sunlight.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lophelia pertusa | Cnidaria | Desmophyllum pertusum, deep-sea coral | Hydrothermal vent | 50-3,600 | Savannah Banks site, off the southeastern coast of the continental USA, Atlantic Ocean (latitude 31.75420, longitude 79.19442) | 174260 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
Loph_1.0 | 556.9Mb | Scaffold | 2023 | JAPMOT01 | Lehigh University | PRJNA903949 | 88.90% | 37,484 |
Title | Journal | Pubmed ID |
---|---|---|
Genome assembly of the deep-sea coral Lophelia pertusa | GigaByte | 36935863 |
Gene ID | Description |
---|---|
OS493_029525-T1 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_029526-T1 | HISTAMINE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
OS493_029527-T1 | |
OS493_029528-T1 | LIPASE |
OS493_029529-T1 | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED |
OS493_029530-T1 | |
OS493_029534-T1 | |
OS493_029535-T1 | |
OS493_029536-T1 | |
OS493_029537-T1 | SODIUM CHANNEL AND CLATHRIN LINKER 1 |
OS493_029538-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_029539-T1 | THYROTROPH EMBRYONIC FACTOR RELATED |
OS493_029540-T1 | TRANSCRIPTION FACTOR CP2 |
OS493_029541-T1 | |
OS493_029542-T1 | |
OS493_029543-T1 | ELECTRON TRANSFER FLAVOPROTEIN-UBIQUINONE OXIDOREDUCTASE |
OS493_029544-T1 | CWF19, CELL CYCLE CONTROL PROTEIN |
OS493_029545-T1 | PROTECTION OF TELOMERES 1 |
OS493_029546-T1 | SURVIVAL OF MOTOR NEURON-RELATED-SPLICING FACTOR 30-RELATED |
OS493_029547-T1 | UNCHARACTERIZED |
OS493_029548-T1 | BETA-ALANINE-ACTIVATING ENZYME |
OS493_029549-T1 | MICROSOMAL SIGNAL PEPTIDASE 23 KD SUBUNIT SPC22/23 |
OS493_029550-T1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
OS493_029551-T1 | |
OS493_029552-T1 | CYCLIC NUCLEOTIDE-GATED CATION CHANNEL SUBUNIT A |
OS493_029553-T1 | LEUCOKININ RECEPTOR-RELATED |
OS493_029554-T1 | |
OS493_029555-T1 | OLFACTORY RECEPTOR AND ADENOSINE RECEPTOR |
OS493_029556-T1 | ATP-BINDING TRANSPORT PROTEIN-RELATED |
OS493_029557-T1 | CGI-12 PROTEIN-RELATED |
OS493_029558-T1 | 60S RIBOSOMAL PROTEIN L21 |
OS493_029559-T1 | PRESEQUENCE TRANSLOCATED-ASSOCIATED MOTOR SUBUNIT PAM17, MITOCHONDRIAL |
OS493_029560-T1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
OS493_029561-T1 | |
OS493_029562-T1 | |
OS493_029563-T1 | |
OS493_029564-T1 | MYOTUBULARIN-RELATED |
OS493_029565-T1 | NUCLEOPORIN P58/P45 NUCLEOPORIN-LIKE PROTEIN 1 |
OS493_029571-T1 | - |
OS493_029572-T1 | - |
OS493_029576-T1 | |
OS493_029577-T1 | |
OS493_029578-T1 | - |
OS493_029580-T1 | |
OS493_029581-T1 | |
OS493_029582-T1 | - |
OS493_029588-T1 | AMMONIUM TRANSPORTER |
OS493_029589-T1 | N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER |
OS493_029590-T1 | RASSF |
OS493_029591-T1 | INTERLEUKIN-27 SUBUNIT BETA |