About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_025737-T1
LLU|FUN_025738-T1
LLU|FUN_025739-T1
LLU|FUN_025740-T1
LLU|FUN_025741-T1
LLU|FUN_025742-T1GERANYLGERANYL PYROPHOSPHATE SYNTHASE
LLU|FUN_025743-T1SET1/ASH2 HISTONE METHYLTRANSFERASE COMPLEX SUBUNIT ASH2
LLU|FUN_025744-T1
LLU|FUN_025745-T1
LLU|FUN_025746-T1SET1/ASH2 HISTONE METHYLTRANSFERASE COMPLEX SUBUNIT ASH2
LLU|FUN_025747-T1PROTEIN KINASE DOMAIN-CONTAINING PROTEIN
LLU|FUN_025748-T1
LLU|FUN_025749-T1
LLU|FUN_025750-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
LLU|FUN_025751-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
LLU|FUN_025752-T1
LLU|FUN_025753-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
LLU|FUN_025754-T1
LLU|FUN_025755-T1INTERFERON-INDUCED PROTEIN 35/NMI N-MYC/STAT INTERACTING PROTEIN
LLU|FUN_025756-T1
LLU|FUN_025757-T1
LLU|FUN_025758-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
LLU|FUN_025759-T1LATROPHILIN RECEPTOR-LIKE PROTEIN A
LLU|FUN_025760-T1
LLU|FUN_025761-T1
LLU|FUN_025762-T1
LLU|FUN_025763-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
LLU|FUN_025764-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
LLU|FUN_025765-T1PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
LLU|FUN_025766-T1
LLU|FUN_025767-T1
LLU|FUN_025768-T1
LLU|FUN_025769-T1
LLU|FUN_025770-T1
LLU|FUN_025771-T1
LLU|FUN_025772-T1F-BOX ONLY PROTEIN 22
LLU|FUN_025773-T1
LLU|FUN_025774-T1COILED-COIL DOMAIN-CONTAINING PROTEIN 192
LLU|FUN_025775-T1SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS
LLU|FUN_025776-T1SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS
LLU|FUN_025777-T1VESICLE PROTEIN SORTING-ASSOCIATED
LLU|FUN_025778-T1PHOSPHOLIPID SCRAMBLASE-RELATED
LLU|FUN_025779-T1TOLL-LIKE RECEPTOR
LLU|FUN_025780-T1
LLU|FUN_025781-T1
LLU|FUN_025782-T1CONTACTIN 5
LLU|FUN_025783-T1
LLU|FUN_025784-T1
LLU|FUN_025785-T1
LLU|FUN_025786-T1FMRFAMIDE RECEPTOR-RELATED
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