Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_025737-T1 | |
LLU|FUN_025738-T1 | |
LLU|FUN_025739-T1 | |
LLU|FUN_025740-T1 | |
LLU|FUN_025741-T1 | |
LLU|FUN_025742-T1 | GERANYLGERANYL PYROPHOSPHATE SYNTHASE |
LLU|FUN_025743-T1 | SET1/ASH2 HISTONE METHYLTRANSFERASE COMPLEX SUBUNIT ASH2 |
LLU|FUN_025744-T1 | |
LLU|FUN_025745-T1 | |
LLU|FUN_025746-T1 | SET1/ASH2 HISTONE METHYLTRANSFERASE COMPLEX SUBUNIT ASH2 |
LLU|FUN_025747-T1 | PROTEIN KINASE DOMAIN-CONTAINING PROTEIN |
LLU|FUN_025748-T1 | |
LLU|FUN_025749-T1 | |
LLU|FUN_025750-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
LLU|FUN_025751-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
LLU|FUN_025752-T1 | |
LLU|FUN_025753-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
LLU|FUN_025754-T1 | |
LLU|FUN_025755-T1 | INTERFERON-INDUCED PROTEIN 35/NMI N-MYC/STAT INTERACTING PROTEIN |
LLU|FUN_025756-T1 | |
LLU|FUN_025757-T1 | |
LLU|FUN_025758-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
LLU|FUN_025759-T1 | LATROPHILIN RECEPTOR-LIKE PROTEIN A |
LLU|FUN_025760-T1 | |
LLU|FUN_025761-T1 | |
LLU|FUN_025762-T1 | |
LLU|FUN_025763-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
LLU|FUN_025764-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
LLU|FUN_025765-T1 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
LLU|FUN_025766-T1 | |
LLU|FUN_025767-T1 | |
LLU|FUN_025768-T1 | |
LLU|FUN_025769-T1 | |
LLU|FUN_025770-T1 | |
LLU|FUN_025771-T1 | |
LLU|FUN_025772-T1 | F-BOX ONLY PROTEIN 22 |
LLU|FUN_025773-T1 | |
LLU|FUN_025774-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 192 |
LLU|FUN_025775-T1 | SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS |
LLU|FUN_025776-T1 | SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS |
LLU|FUN_025777-T1 | VESICLE PROTEIN SORTING-ASSOCIATED |
LLU|FUN_025778-T1 | PHOSPHOLIPID SCRAMBLASE-RELATED |
LLU|FUN_025779-T1 | TOLL-LIKE RECEPTOR |
LLU|FUN_025780-T1 | |
LLU|FUN_025781-T1 | |
LLU|FUN_025782-T1 | CONTACTIN 5 |
LLU|FUN_025783-T1 | |
LLU|FUN_025784-T1 | |
LLU|FUN_025785-T1 | |
LLU|FUN_025786-T1 | FMRFAMIDE RECEPTOR-RELATED |