Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_025687-T1 | CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN |
LLU|FUN_025688-T1 | |
LLU|FUN_025689-T1 | |
LLU|FUN_025690-T1 | |
LLU|FUN_025691-T1 | |
LLU|FUN_025692-T1 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
LLU|FUN_025693-T1 | ZINC FINGER PROTEIN |
LLU|FUN_025694-T1 | ZINC FINGER PROTEIN |
LLU|FUN_025695-T1 | ZINC FINGER PROTEIN |
LLU|FUN_025696-T1 | PR DOMAIN ZINC FINGER PROTEIN |
LLU|FUN_025697-T1 | ZINC FINGER AND BTB DOMAIN-CONTAINING |
LLU|FUN_025698-T1 | ZINC FINGER AND BTB DOMAIN-CONTAINING |
LLU|FUN_025699-T1 | ZINC FINGER AND BTB DOMAIN-CONTAINING |
LLU|FUN_025700-T1 | FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED |
LLU|FUN_025701-T1 | PR DOMAIN ZINC FINGER PROTEIN |
LLU|FUN_025702-T1 | ZINC FINGER PROTEIN |
LLU|FUN_025703-T1 | ZINC FINGER PROTEIN |
LLU|FUN_025704-T1 | ZINC FINGER PROTEIN |
LLU|FUN_025705-T1 | FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED |
LLU|FUN_025706-T1 | ZINC FINGER PROTEIN |
LLU|FUN_025707-T1 | KRAB AND ZINC FINGER DOMAIN-CONTAINING |
LLU|FUN_025708-T1 | ZINC FINGER PROTEIN |
LLU|FUN_025709-T1 | |
LLU|FUN_025710-T1 | |
LLU|FUN_025711-T1 | |
LLU|FUN_025712-T1 | |
LLU|FUN_025713-T1 | ZINC FINGER AND BTB DOMAIN-CONTAINING |
LLU|FUN_025714-T1 | ZINC FINGER PROTEIN |
LLU|FUN_025715-T1 | |
LLU|FUN_025716-T1 | |
LLU|FUN_025717-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
LLU|FUN_025718-T1 | |
LLU|FUN_025719-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
LLU|FUN_025720-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
LLU|FUN_025721-T1 | NUCLEOREDOXIN |
LLU|FUN_025722-T1 | |
LLU|FUN_025723-T1 | |
LLU|FUN_025724-T1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
LLU|FUN_025725-T1 | PEPTIDYL-PROLYL CIS-TRANS ISOMERASE |
LLU|FUN_025726-T1 | DISKS LARGE HOMOLOG 5 |
LLU|FUN_025727-T1 | |
LLU|FUN_025728-T1 | |
LLU|FUN_025729-T1 | ANKYRIN REPEAT-CONTAINING |
LLU|FUN_025730-T1 | ATP-DEPENDENT RNA HELICASE DBP3 |
LLU|FUN_025731-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 57 |
LLU|FUN_025732-T1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 57 |
LLU|FUN_025733-T1 | - |
LLU|FUN_025734-T1 | METABOTROPIC GLUTAMATE RECEPTOR |
LLU|FUN_025735-T1 | |
LLU|FUN_025736-T1 |