About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_025484-T1UPF0462 PROTEIN
LLU|FUN_025485-T1
LLU|FUN_025486-T1
LLU|FUN_025487-T1
LLU|FUN_025488-T1
LLU|FUN_025489-T1
LLU|FUN_025490-T1
LLU|FUN_025491-T1
LLU|FUN_025492-T1DENTIN MATRIX PROTEIN 4 PROTEIN FAM20
LLU|FUN_025493-T1CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN
LLU|FUN_025494-T1
LLU|FUN_025495-T1CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN
LLU|FUN_025496-T1CALCIUM-ACTIVATED POTASSIUM CHANNEL ALPHA CHAIN
LLU|FUN_025497-T1
LLU|FUN_025498-T1
LLU|FUN_025499-T1
LLU|FUN_025500-T1
LLU|FUN_025501-T1
LLU|FUN_025502-T1
LLU|FUN_025503-T1BETA-1,4-GALACTOSYLTRANSFERASE
LLU|FUN_025504-T1ARGININOSUCCINATE SYNTHASE
LLU|FUN_025505-T1
LLU|FUN_025506-T1
LLU|FUN_025507-T1IRON-SULFUR PROTEIN NUBPL
LLU|FUN_025508-T1NICASTRIN
LLU|FUN_025509-T1NICASTRIN
LLU|FUN_025510-T1
LLU|FUN_025511-T1NICASTRIN
LLU|FUN_025512-T1TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT
LLU|FUN_025513-T1FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
LLU|FUN_025514-T1FAS-ASSOCIATING DEATH DOMAIN-CONTAINING PROTEIN FADD
LLU|FUN_025515-T1LONG-CHAIN-FATTY-ACID--COA LIGASE
LLU|FUN_025516-T1
LLU|FUN_025517-T1
LLU|FUN_025518-T1
LLU|FUN_025519-T1
LLU|FUN_025520-T1
LLU|FUN_025521-T1EPPIN
LLU|FUN_025522-T1SET DOMAIN-CONTAINING PROTEIN-RELATED
LLU|FUN_025523-T1ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
LLU|FUN_025524-T1KUNITZ-TYPE PROTEASE INHIBITOR-RELATED
LLU|FUN_025525-T1WHEY ACDIC PROTEIN WAP
LLU|FUN_025526-T1KUNITZ-TYPE PROTEASE INHIBITOR-RELATED
LLU|FUN_025527-T1
LLU|FUN_025528-T1KUNITZ-TYPE PROTEASE INHIBITOR-RELATED
LLU|FUN_025529-T1
LLU|FUN_025530-T1KUNITZ-TYPE PROTEASE INHIBITOR-RELATED
LLU|FUN_025531-T1EPPIN
LLU|FUN_025532-T1EPPIN
LLU|FUN_025533-T1SECRETED MODULAR CALCIUM-BINDING PROTEIN
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