About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_025890-T1ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN
LLU|FUN_025891-T1
LLU|FUN_025892-T1TRANSMEMBRANE PROTEIN 180
LLU|FUN_025893-T1
LLU|FUN_025894-T1CDK2-ASSOCIATED AND CULLIN DOMAIN-CONTAINING PROTEIN 1
LLU|FUN_025895-T1VESICULAR MANNOSE-BINDING LECTIN
LLU|FUN_025896-T1CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 46
LLU|FUN_025897-T1PARKIN COREGULATED GENE PROTEIN PARK2 COREGULATED
LLU|FUN_025898-T1TANDEM PH DOMAIN CONTAINING PROTEIN
LLU|FUN_025899-T1SET AND MYND DOMAIN-CONTAINING PROTEIN 5
LLU|FUN_025900-T1E3 UBIQUITIN-PROTEIN LIGASE TM129
LLU|FUN_025901-T1ZINC FINGER CCHC DOMAIN-CONTAINING
LLU|FUN_025903-T1
LLU|FUN_025904-T1RING/U-BOX SUPERFAMILY PROTEIN
LLU|FUN_025905-T1
LLU|FUN_025906-T1
LLU|FUN_025907-T1RING/U-BOX SUPERFAMILY PROTEIN
LLU|FUN_025908-T1SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION
LLU|FUN_025909-T1
LLU|FUN_025910-T1
LLU|FUN_025911-T1
LLU|FUN_025912-T1
LLU|FUN_025913-T1CRUMBS FAMILY MEMBER
LLU|FUN_025914-T1
LLU|FUN_025915-T1
LLU|FUN_025916-T1ATP-DEPENDENT RNA HELICASE
LLU|FUN_025917-T1
LLU|FUN_025918-T1ADENOSINE/GUANOSINE DIPHOSPHATASE
LLU|FUN_025919-T1
LLU|FUN_025920-T1RBP-RELATED
LLU|FUN_025921-T1NEUROTRANSMITTER GATED ION CHANNEL
LLU|FUN_025922-T1NADH DEHYDROGENASE
LLU|FUN_025923-T1ORIGIN RECOGNITION COMPLEX SUBUNIT 4
LLU|FUN_025924-T1
LLU|FUN_025925-T1FUMIPYRROLE BIOSYNTHESIS PROTEIN C
LLU|FUN_025926-T1EXOCYST COMPLEX COMPONENT 4
LLU|FUN_025927-T1EXOCYST COMPLEX COMPONENT 4
LLU|FUN_025928-T1INACTIVE RHOMBOID PROTEIN
LLU|FUN_025929-T1TRANSFERASE, PUTATIVE-RELATED
LLU|FUN_025930-T1
LLU|FUN_025931-T1NG5
LLU|FUN_025932-T1ZINC/IRON TRANSPORTER
LLU|FUN_025933-T1
LLU|FUN_025934-T1KRUEPPEL-LIKE TRANSCRIPTION FACTOR
LLU|FUN_025935-T1
LLU|FUN_025936-T1
LLU|FUN_025937-T1ZINC/IRON TRANSPORTER
LLU|FUN_025938-T1
LLU|FUN_025939-T1ZINC/IRON TRANSPORTER
LLU|FUN_025940-T1NEUROPHYSIN
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