Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia luymesi | Annelida | cold seep-dwelling tubeworm Lamellibrachia luymesi | Hydrothermal vent | >540 | the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′) | 238240 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
LLUY_1.0 | ~688Mb | Scaffold | 2019 | SDWI01 | Auburn University | PRJNA516467 | ~95% | 38,998 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesi | BMC Biology | 31739792 |
Gene ID | Description |
---|---|
LLU|FUN_025890-T1 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
LLU|FUN_025891-T1 | |
LLU|FUN_025892-T1 | TRANSMEMBRANE PROTEIN 180 |
LLU|FUN_025893-T1 | |
LLU|FUN_025894-T1 | CDK2-ASSOCIATED AND CULLIN DOMAIN-CONTAINING PROTEIN 1 |
LLU|FUN_025895-T1 | VESICULAR MANNOSE-BINDING LECTIN |
LLU|FUN_025896-T1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 46 |
LLU|FUN_025897-T1 | PARKIN COREGULATED GENE PROTEIN PARK2 COREGULATED |
LLU|FUN_025898-T1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
LLU|FUN_025899-T1 | SET AND MYND DOMAIN-CONTAINING PROTEIN 5 |
LLU|FUN_025900-T1 | E3 UBIQUITIN-PROTEIN LIGASE TM129 |
LLU|FUN_025901-T1 | ZINC FINGER CCHC DOMAIN-CONTAINING |
LLU|FUN_025903-T1 | |
LLU|FUN_025904-T1 | RING/U-BOX SUPERFAMILY PROTEIN |
LLU|FUN_025905-T1 | |
LLU|FUN_025906-T1 | |
LLU|FUN_025907-T1 | RING/U-BOX SUPERFAMILY PROTEIN |
LLU|FUN_025908-T1 | SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION |
LLU|FUN_025909-T1 | |
LLU|FUN_025910-T1 | |
LLU|FUN_025911-T1 | |
LLU|FUN_025912-T1 | |
LLU|FUN_025913-T1 | CRUMBS FAMILY MEMBER |
LLU|FUN_025914-T1 | |
LLU|FUN_025915-T1 | |
LLU|FUN_025916-T1 | ATP-DEPENDENT RNA HELICASE |
LLU|FUN_025917-T1 | |
LLU|FUN_025918-T1 | ADENOSINE/GUANOSINE DIPHOSPHATASE |
LLU|FUN_025919-T1 | |
LLU|FUN_025920-T1 | RBP-RELATED |
LLU|FUN_025921-T1 | NEUROTRANSMITTER GATED ION CHANNEL |
LLU|FUN_025922-T1 | NADH DEHYDROGENASE |
LLU|FUN_025923-T1 | ORIGIN RECOGNITION COMPLEX SUBUNIT 4 |
LLU|FUN_025924-T1 | |
LLU|FUN_025925-T1 | FUMIPYRROLE BIOSYNTHESIS PROTEIN C |
LLU|FUN_025926-T1 | EXOCYST COMPLEX COMPONENT 4 |
LLU|FUN_025927-T1 | EXOCYST COMPLEX COMPONENT 4 |
LLU|FUN_025928-T1 | INACTIVE RHOMBOID PROTEIN |
LLU|FUN_025929-T1 | TRANSFERASE, PUTATIVE-RELATED |
LLU|FUN_025930-T1 | |
LLU|FUN_025931-T1 | NG5 |
LLU|FUN_025932-T1 | ZINC/IRON TRANSPORTER |
LLU|FUN_025933-T1 | |
LLU|FUN_025934-T1 | KRUEPPEL-LIKE TRANSCRIPTION FACTOR |
LLU|FUN_025935-T1 | |
LLU|FUN_025936-T1 | |
LLU|FUN_025937-T1 | ZINC/IRON TRANSPORTER |
LLU|FUN_025938-T1 | |
LLU|FUN_025939-T1 | ZINC/IRON TRANSPORTER |
LLU|FUN_025940-T1 | NEUROPHYSIN |