About Lamellibrachia luymesi

Lamellibrachia luymesi is a species of tube worms in the family Siboglinidae. It lives at deep-sea cold seeps where hydrocarbons (oil and methane) are leaking out of the seafloor. It is entirely reliant on internal, sulfide-oxidizing bacterial symbionts for its nutrition. These are located in a centrally located 'trophosome'. It provides the bacteria with hydrogen sulfide and oxygen by taking them up from the environment and binding them to a specialized hemoglobin molecule. It may help fuel the generation of sulfide by excreting sulfate through their roots into the sediments below the aggregations.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia luymesiAnnelidacold seep-dwelling tubeworm Lamellibrachia luymesiHydrothermal vent>540the Gulf of Mexico (N 28° 11.58′, W 89° 47.94′)238240

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
LLUY_1.0~688MbScaffold2019SDWI01Auburn UniversityPRJNA516467~95%38,998

References
TitleJournalPubmed ID
Genomic adaptations to chemosymbiosis in the deep-sea seep-dwelling tubeworm Lamellibrachia luymesiBMC Biology31739792

Gene Information

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Gene IDDescription
LLU|FUN_023248-T1
LLU|FUN_023249-T1CELL DIVISION CYCLE ASSOCIATED PROTEIN 4/SERTA DOMAIN-CONTAINING PROTEIN 2
LLU|FUN_023250-T1AFTIPHILIN A-RELATED
LLU|FUN_023251-T1CYTOCHROME B5
LLU|FUN_023252-T1ZYGIN
LLU|FUN_023253-T1RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN
LLU|FUN_023254-T1HELICASE SRCAP-RELATED
LLU|FUN_023255-T1HELICASE SRCAP-RELATED
LLU|FUN_023256-T1
LLU|FUN_023257-T1CATION TRANSPORT PROTEIN CHAC-RELATED
LLU|FUN_023258-T1
LLU|FUN_023259-T1CATION TRANSPORT PROTEIN CHAC-RELATED
LLU|FUN_023260-T1
LLU|FUN_023261-T1
LLU|FUN_023262-T1NOTCH LIGAND FAMILY MEMBER
LLU|FUN_023263-T1
LLU|FUN_023264-T1
LLU|FUN_023265-T1
LLU|FUN_023266-T1
LLU|FUN_023267-T1
LLU|FUN_023268-T1
LLU|FUN_023269-T1
LLU|FUN_023270-T1DULLARD PROTEIN PHOSPHATASE
LLU|FUN_023271-T1ENDOPLASMIC RETICULUM MEMBRANE-ASSOCIATED RNA DEGRADATION PROTEIN
LLU|FUN_023272-T1AQUAPORIN OR AQUAGLYCEROPORIN RELATED
LLU|FUN_023273-T1
LLU|FUN_023274-T1
LLU|FUN_023275-T1AQUAPORIN OR AQUAGLYCEROPORIN RELATED
LLU|FUN_023276-T1TRANSMEMBRANE PROTEIN 254
LLU|FUN_023277-T1CYSTEINE AND GLYCINE-RICH PROTEIN 2 BINDING PROTEIN
LLU|FUN_023278-T1
LLU|FUN_023279-T1
LLU|FUN_023280-T1
LLU|FUN_023281-T1
LLU|FUN_023282-T1
LLU|FUN_023283-T1
LLU|FUN_023284-T1
LLU|FUN_023285-T1
LLU|FUN_023286-T1VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED
LLU|FUN_023287-T1PROTEIN EVA-1
LLU|FUN_023288-T1
LLU|FUN_023289-T1SETA BINDING PROTEIN 1
LLU|FUN_023290-T1SYNTAXIN
LLU|FUN_023291-T1METHIONINE SYNTHASE
LLU|FUN_023292-T1METHIONINE SYNTHASE
LLU|FUN_023293-T1TYROSINE-PROTEIN KINASE RECEPTOR
LLU|FUN_023294-T1THIAMIN PYROPHOSPHOKINASE
LLU|FUN_023295-T1ACYLTRANSFERASE
LLU|FUN_023296-T1
LLU|FUN_023297-T1ZINC FINGER PROTEIN 839
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