About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50%27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s003.g0134.t1FIBRINOGEN/TENASCIN/ANGIOPOEITIN
Lsat_s003.g0135.t1DUMPY: SHORTER THAN WILD-TYPE
Lsat_s003.g0136.t1
Lsat_s003.g0137.t1ALKALINE CERAMIDASE
Lsat_s003.g0138.t1SODIUM LEAK CHANNEL NON-SELECTIVE PROTEIN
Lsat_s003.g0139.t1UBIQUITIN-LIKE-CONJUGATING ENZYME ATG3
Lsat_s003.g0140.t1MYOSIN LIGHT CHAIN 1, 3
Lsat_s003.g0141.t1STEREOCILIN RELATED
Lsat_s003.g0142.t1ZGC:172121
Lsat_s003.g0143.t1STEREOCILIN RELATED
Lsat_s003.g0144.t1
Lsat_s003.g0145.t1
Lsat_s003.g0146.t1NEUROBLAST DIFFERENTIATION-ASSOCIATED PROTEIN AHNAK-LIKE PROTEIN
Lsat_s003.g0147.t1
Lsat_s003.g0148.t1
Lsat_s003.g0149.t1
Lsat_s003.g0150.t1
Lsat_s003.g0151.t1
Lsat_s003.g0152.t1
Lsat_s003.g0153.t1
Lsat_s003.g0154.t1THYMIDYLATE KINASE
Lsat_s003.g0155.t1
Lsat_s003.g0156.t1THYMIDYLATE KINASE
Lsat_s003.g0157.t1SERINE/ARGININE-RELATED PROTEIN 53
Lsat_s003.g0158.t1BRCA2-INTERACTING TRANSCRIPTIONAL REPRESSOR EMSY
Lsat_s003.g0159.t1
Lsat_s003.g0160.t1EUKARYOTIC TRANSLATION INITIATION FACTOR 2A
Lsat_s003.g0161.t1VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED
Lsat_s003.g0162.t1NEUROLIGIN
Lsat_s003.g0163.t1LD33804P
Lsat_s003.g0164.t1
Lsat_s003.g0165.t1
Lsat_s003.g0166.t1
Lsat_s003.g0167.t1
Lsat_s003.g0168.t1
Lsat_s003.g0169.t1
Lsat_s003.g0170.t1SPRY DOMAIN CONTAINING SOCS BOX PROTEIN
Lsat_s003.g0171.t1UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN
Lsat_s003.g0172.t1
Lsat_s003.g0173.t1ATP-DEPENDENT RNA HELICASE DBP3
Lsat_s003.g0174.t1CXC DOMAIN-CONTAINING PROTEIN-RELATED
Lsat_s003.g0175.t1RIBOSOMAL PROTEIN L2
Lsat_s003.g0176.t1SOLUTE CARRIER FAMILY 5
Lsat_s003.g0177.t1
Lsat_s003.g0178.t1
Lsat_s003.g0179.t1
Lsat_s003.g0180.t1
Lsat_s003.g0181.t1
Lsat_s003.g0182.t1
Lsat_s003.g0183.t1
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