About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50%27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s002.g0710.t1
Lsat_s002.g0711.t1
Lsat_s002.g0712.t1-
Lsat_s002.g0713.t1CUBILIN
Lsat_s002.g0714.t1
Lsat_s002.g0715.t1INTERLEUKIN-1 RECEPTOR-ASSOCIATED KINASE 1-BINDING PROTEIN 1
Lsat_s002.g0716.t1
Lsat_s002.g0717.t1
Lsat_s002.g0718.t1MYOGENIC FACTOR
Lsat_s002.g0719.t1
Lsat_s002.g0720.t1OVOCHYMASE-RELATED
Lsat_s002.g0721.t1
Lsat_s002.g0722.t1
Lsat_s002.g0723.t1
Lsat_s002.g0724.t1GCIP-INTERACTING PROTEIN P29
Lsat_s002.g0725.t1
Lsat_s002.g0726.t1
Lsat_s003.g0001.t1UNCHARACTERIZED
Lsat_s003.g0002.t1TRANSCRIPTION TERMINATION FACTOR, MITOCHONDRIAL
Lsat_s003.g0003.t1STRAWBERRY NOTCH-RELATED
Lsat_s003.g0004.t1RAB GTPASE-ACTIVATING PROTEIN 1-LIKE
Lsat_s003.g0005.t1WD40 REPEAT PROTEIN
Lsat_s003.g0006.t1AMMECR1 HOMOLOG
Lsat_s003.g0007.t1NACHT, LRR AND CARD DOMAINS-CONTAINING
Lsat_s003.g0008.t1YNEIN REGULATORY COMPLEX SUBUNIT 5
Lsat_s003.g0009.t1
Lsat_s003.g0010.t1TRANSLATIONALLY CONTROLLED TUMOR PROTEIN-RELATED
Lsat_s003.g0011.t1MONOCARBOXYLATE TRANSPORTER
Lsat_s003.g0012.t1JITTERBUG, ISOFORM N
Lsat_s003.g0013.t1
Lsat_s003.g0014.t1GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE
Lsat_s003.g0015.t1ACYL-COA DEHYDROGENASE
Lsat_s003.g0016.t1EXPRESSED PROTEIN
Lsat_s003.g0017.t1
Lsat_s003.g0018.t1UNCHARACTERIZED
Lsat_s003.g0019.t1RHO-TYPE GUANINE NUCLEOTIDE EXCHANGE FACTOR, ISOFORM F
Lsat_s003.g0020.t1FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED
Lsat_s003.g0021.t1RHO-TYPE GUANINE NUCLEOTIDE EXCHANGE FACTOR, ISOFORM F
Lsat_s003.g0022.t1IMPORTIN BETA
Lsat_s003.g0023.t1
Lsat_s003.g0024.t1RAN GTPASE-ACTIVATING PROTEIN 1
Lsat_s003.g0025.t1ACROSIN-RELATED
Lsat_s003.g0026.t1RAN GTPASE-ACTIVATING PROTEIN 1
Lsat_s003.g0027.t1
Lsat_s003.g0028.t1YIPPEE DOMAIN-CONTAINING PROTEIN
Lsat_s003.g0029.t1AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C
Lsat_s003.g0030.t1
Lsat_s003.g0031.t1
Lsat_s003.g0032.t1
Lsat_s003.g0033.t1
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