
Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s002.g0460.t1 | |
| Lsat_s002.g0461.t1 | PROTEIN CBG17025 |
| Lsat_s002.g0462.t1 | |
| Lsat_s002.g0463.t1 | NUCLEAR HORMONE RECEPTOR |
| Lsat_s002.g0464.t1 | |
| Lsat_s002.g0465.t1 | |
| Lsat_s002.g0466.t1 | SOX TRANSCRIPTION FACTOR |
| Lsat_s002.g0467.t1 | SYNAPTONEMAL COMPLEX PROTEIN 1 |
| Lsat_s002.g0468.t1 | LIN-24 (TWENTY-FOUR) LIKE |
| Lsat_s002.g0469.t1 | LIN-24 (TWENTY-FOUR) LIKE |
| Lsat_s002.g0470.t1 | AROMATIC AMINO ACID HYDROXYLASE |
| Lsat_s002.g0471.t1 | PEPTIDASE M20 |
| Lsat_s002.g0472.t1 | BTB/POZ DOMAIN-CONTAINING PROTEIN 10-RELATED |
| Lsat_s002.g0473.t1 | DOWNSTREAM NEIGHBOR OF SON |
| Lsat_s002.g0474.t1 | PROTEIN CBG11839-RELATED |
| Lsat_s002.g0475.t1 | PROTEIN SON |
| Lsat_s002.g0476.t1 | MANNOSYL-OLIGOSACCHARIDE ALPHA-1,2-MANNOSIDASE-RELATED |
| Lsat_s002.g0477.t1 | |
| Lsat_s002.g0478.t1 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Lsat_s002.g0479.t1 | |
| Lsat_s002.g0480.t1 | RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SMALL CHAIN |
| Lsat_s002.g0481.t1 | PYRIDOXAL KINASE |
| Lsat_s002.g0482.t1 | PYRIDOXAL KINASE |
| Lsat_s002.g0483.t1 | |
| Lsat_s002.g0484.t1 | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR |
| Lsat_s002.g0485.t1 | PYRUVATE DEHYDROGENASE E1 COMPONENT, ALPHA SUBUNIT BACTERIAL AND ORGANELLAR |
| Lsat_s002.g0486.t1 | SNF2/RAD54 HELICASE FAMILY |
| Lsat_s002.g0487.t1 | PROTEIN CBG26694 |
| Lsat_s002.g0488.t1 | DUF914-RELATED |
| Lsat_s002.g0489.t1 | DRAB11-RELATED |
| Lsat_s002.g0490.t1 | CYTOCHROME B5 REDUCTASE 4 FAMILY MEMBER |
| Lsat_s002.g0491.t1 | MONOCARBOXYLATE TRANSPORTER |
| Lsat_s002.g0492.t1 | ACTIN |
| Lsat_s002.g0493.t1 | WD40 REPEAT PROTEIN |
| Lsat_s002.g0494.t1 | FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED |
| Lsat_s002.g0495.t1 | CS DOMAIN-CONTAINING PROTEIN |
| Lsat_s002.g0496.t1 | |
| Lsat_s002.g0497.t1 | |
| Lsat_s002.g0498.t1 | |
| Lsat_s002.g0499.t1 | POL PROTEIN |
| Lsat_s002.g0500.t1 | PDZ AND LIM DOMAIN PROTEIN ZASP |
| Lsat_s002.g0501.t1 | TRANSCRIPTION INITIATION FACTOR TFIID/SUPT3-RELATED |
| Lsat_s002.g0502.t1 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
| Lsat_s002.g0503.t1 | UNCHARACTERIZED |
| Lsat_s002.g0504.t1 | TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12 |
| Lsat_s002.g0505.t1 | |
| Lsat_s002.g0506.t1 | CHITINASE DOMAIN-CONTAINING PROTEIN 1 FAMILY MEMBER |
| Lsat_s002.g0507.t1 | TESTIS-SPECIFIC PROTEIN PBS13 T-COMPLEX 11 |
| Lsat_s002.g0508.t1 | ACID AMIDASE |
| Lsat_s002.g0509.t1 | DPY-19-LIKE 1, LIKE (H. SAPIENS) |