Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
Title | Journal | Pubmed ID |
---|---|---|
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
Gene ID | Description |
---|---|
Lsat_s002.g0560.t1 | |
Lsat_s002.g0561.t1 | DNA POLYMERASE ZETA CATALYTIC SUBUNIT |
Lsat_s002.g0562.t1 | SUPEROXIDE DISMUTASE CU-ZN -RELATED |
Lsat_s002.g0563.t1 | EXPORTIN 4,7-RELATED |
Lsat_s002.g0564.t1 | SERINE/THREONINE-PROTEIN KINASE |
Lsat_s002.g0565.t1 | UPF0240 PROTEIN |
Lsat_s002.g0566.t1 | OS05G0521000 PROTEIN |
Lsat_s002.g0567.t1 | UNCHARACTERIZED |
Lsat_s002.g0568.t1 | UNCHARACTERIZED |
Lsat_s002.g0569.t1 | POLYCYSTIC KIDNEY AND HEPATIC DISEASE 1 (AUTOSOMAL RECESSIVE)-LIKE 1 |
Lsat_s002.g0570.t1 | COLLAGEN IV NC1 DOMAIN-CONTAINING PROTEIN |
Lsat_s002.g0571.t1 | VOLTAGE-DEPENDENT CALCIUM CHANNEL SUBUNIT ALPHA-2/DELTA-RELATED |
Lsat_s002.g0572.t1 | |
Lsat_s002.g0573.t1 | POPEYE DOMAIN CONTAINING PROTEIN |
Lsat_s002.g0574.t1 | POPEYE DOMAIN CONTAINING PROTEIN |
Lsat_s002.g0575.t1 | 39S RIBOSOMAL PROTEIN L43 |
Lsat_s002.g0576.t1 | BETA-1,4-GALACTOSYLTRANSFERASE |
Lsat_s002.g0577.t1 | |
Lsat_s002.g0578.t1 | CHEMOKINE C-C MOTIF RECEPTOR 1 |
Lsat_s002.g0579.t1 | METABOTROPIC GLUTAMATE RECEPTOR |
Lsat_s002.g0580.t1 | METABOTROPIC GLUTAMATE RECEPTOR |
Lsat_s002.g0581.t1 | LORICRIN |
Lsat_s002.g0582.t1 | |
Lsat_s002.g0583.t1 | MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED |
Lsat_s002.g0584.t1 | TETRASPANIN |
Lsat_s002.g0585.t1 | PROTEIN CBG04600 |
Lsat_s002.g0586.t1 | PROTEIN CBG04600 |
Lsat_s002.g0587.t1 | MICROSOMAL GLUTATHIONE S-TRANSFERASE |
Lsat_s002.g0588.t1 | CYSTEINE PROTEASE FAMILY C1-RELATED |
Lsat_s002.g0589.t1 | |
Lsat_s002.g0590.t1 | RNA-BINDING PROTEIN RELATED |
Lsat_s002.g0591.t1 | RNA HELICASE |
Lsat_s002.g0592.t1 | |
Lsat_s002.g0593.t1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 8/LIPOPOLYSACCHARIDE SPECIFIC RESPONSE-7-RELATED |
Lsat_s002.g0594.t1 | GALACTOSE-3-O-SULFOTRANSFERASE |
Lsat_s002.g0595.t1 | CENTROSOMAL PROTEIN OF 162 KDA |
Lsat_s002.g0596.t1 | SERINE PROTEASE INHIBITOR, SERPIN |
Lsat_s002.g0597.t1 | |
Lsat_s002.g0598.t1 | |
Lsat_s002.g0599.t1 | |
Lsat_s002.g0600.t1 | CADHERIN-23 |
Lsat_s002.g0601.t1 | PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT SDS22-RELATED |
Lsat_s002.g0602.t1 | 60S RIBOSOMAL PROTEIN L24 |
Lsat_s002.g0603.t1 | |
Lsat_s002.g0604.t1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST |
Lsat_s002.g0605.t1 | BLR2807 PROTEIN |
Lsat_s002.g0606.t1 | TRANSGELIN |
Lsat_s002.g0607.t1 | O-ACYLTRANSFERASE (WSD1-LIKE) FAMILY PROTEIN |
Lsat_s002.g0608.t1 | LD44813P |
Lsat_s002.g0609.t1 |