Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s002.g0310.t1 | ANOCTAMIN |
| Lsat_s002.g0311.t1 | - |
| Lsat_s002.g0312.t1 | SH3 AND MULTIPLE ANKYRIN REPEAT DOMAINS PROTEIN |
| Lsat_s002.g0313.t1 | SH3 AND MULTIPLE ANKYRIN REPEAT DOMAINS PROTEIN |
| Lsat_s002.g0314.t1 | RAB GTPASE-ACTIVATING PROTEIN 1-LIKE |
| Lsat_s002.g0315.t1 | DUAL SPECIFICITY PROTEIN PHOSPHATASE |
| Lsat_s002.g0316.t1 | - |
| Lsat_s002.g0317.t1 | TGF-BETA-ACTIVATED KINASE 1 AND MAP3K7-BINDING PROTEIN TAB |
| Lsat_s002.g0318.t1 | KINETOCHORE PROTEIN NDC80 |
| Lsat_s002.g0319.t1 | BETA TRANSDUCIN-RELATED PROTEIN |
| Lsat_s002.g0320.t1 | |
| Lsat_s002.g0321.t1 | ISOBUTYRYL-COA DEHYDROGENASE |
| Lsat_s002.g0322.t1 | CUE DOMAIN CONTAINING 2 |
| Lsat_s002.g0323.t1 | DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER |
| Lsat_s002.g0324.t1 | RECQ-MEDIATED GENOME INSTABILITY PROTEIN 1 RMI1 |
| Lsat_s002.g0325.t1 | |
| Lsat_s002.g0326.t1 | |
| Lsat_s002.g0327.t1 | |
| Lsat_s002.g0328.t1 | |
| Lsat_s002.g0329.t1 | T-BOX PROTEIN-RELATED |
| Lsat_s002.g0330.t1 | GANGLIOSIDE INDUCED DIFFERENTIATION ASSOCIATED PROTEIN 2-RELATED |
| Lsat_s002.g0331.t1 | |
| Lsat_s002.g0332.t1 | PRION-LIKE- Q/N-RICH -DOMAIN-BEARING PROTEIN PROTEIN 44 |
| Lsat_s002.g0333.t1 | |
| Lsat_s002.g0334.t1 | |
| Lsat_s002.g0335.t1 | 2-OXOISOVALERATE DEHYDROGENASE SUBUNIT BETA-RELATED |
| Lsat_s002.g0336.t1 | ARGININE-TRNA-PROTEIN TRANSFERASE 1 |
| Lsat_s002.g0337.t1 | GLUTATHIONYL-HYDROQUINONE REDUCTASE |
| Lsat_s002.g0338.t1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| Lsat_s002.g0339.t1 | TIAM (MAMMALIAN TUMOR INVASION AND METASTASIS FACTOR) HOMOLOG |
| Lsat_s002.g0340.t1 | WD REPEAT DOMAIN-CONTAINING FAMILY |
| Lsat_s002.g0341.t1 | MITOCHONDRIAL DIVISION PROTEIN 1-RELATED |
| Lsat_s002.g0342.t1 | RNA HELICASE |
| Lsat_s002.g0343.t1 | |
| Lsat_s002.g0344.t1 | |
| Lsat_s002.g0345.t1 | |
| Lsat_s002.g0346.t1 | |
| Lsat_s002.g0347.t1 | |
| Lsat_s002.g0348.t1 | |
| Lsat_s002.g0349.t1 | SEC63 DOMAIN-CONTAINING |
| Lsat_s002.g0350.t1 | |
| Lsat_s002.g0351.t1 | COMPLEMENT COMPONENT 1, S SUBCOMPONENT-RELATED |
| Lsat_s002.g0352.t1 | OVOCHYMASE-RELATED |
| Lsat_s002.g0353.t1 | OVOCHYMASE-RELATED |
| Lsat_s002.g0354.t1 | |
| Lsat_s002.g0355.t1 | |
| Lsat_s002.g0356.t1 | DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED |
| Lsat_s002.g0357.t1 | UNCHARACTERIZED |
| Lsat_s002.g0358.t1 | UNCHARACTERIZED |
| Lsat_s002.g0359.t1 | DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED |
