Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Lamellibrachia satsuma | Annelida | tube worms | Cold seep | 110 | Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE) | 104711 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM3323900v1 | 736Mb | Scaffold | 2023 | BSQZ01 | Atmosphere and Ocean Research Institute, The University of Tokyo | PRJDB14199 | 95.50% | 27,979 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsuma | DNA Research | 37358253 |
| Gene ID | Description |
|---|---|
| Lsat_s002.g0160.t1 | G-PROTEIN COUPLED RECEPTOR |
| Lsat_s002.g0161.t1 | G-PROTEIN COUPLED RECEPTOR |
| Lsat_s002.g0162.t1 | G-PROTEIN COUPLED RECEPTOR |
| Lsat_s002.g0163.t1 | G-PROTEIN COUPLED RECEPTOR |
| Lsat_s002.g0164.t1 | |
| Lsat_s002.g0165.t1 | |
| Lsat_s002.g0166.t1 | COPROPORPHYRINOGEN III OXIDASE, MITOCHONDRIAL |
| Lsat_s002.g0167.t1 | LETHAL 2 GIANT LARVAE PROTEIN |
| Lsat_s002.g0168.t1 | MEIOSIS-SPECIFIC PROTEIN MEI4 |
| Lsat_s002.g0169.t1 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
| Lsat_s002.g0170.t1 | |
| Lsat_s002.g0171.t1 | PLAT DOMAIN-CONTAINING PROTEIN |
| Lsat_s002.g0172.t1 | |
| Lsat_s002.g0173.t1 | SYNAPTOTAGMIN |
| Lsat_s002.g0174.t1 | MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR B |
| Lsat_s002.g0175.t1 | ADP-RIBOSYLATION FACTOR GTPASE ACTIVATING PROTEIN 3, ISOFORM H-RELATED |
| Lsat_s002.g0176.t1 | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED |
| Lsat_s002.g0177.t1 | LYSOSOMAL ACID LIPASE-RELATED |
| Lsat_s002.g0178.t1 | TRANSALDOLASE |
| Lsat_s002.g0179.t1 | ACTIVATING MOLECULE IN BECN1-REGULATED AUTOPHAGY PROTEIN 1 |
| Lsat_s002.g0180.t1 | ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 13B |
| Lsat_s002.g0181.t1 | UPF0041 BRAIN PROTEIN 44-RELATED |
| Lsat_s002.g0182.t1 | DNA POLYMERASE I |
| Lsat_s002.g0183.t1 | FER-1-LIKE |
| Lsat_s002.g0184.t1 | SIGMA INTRACELLULAR RECEPTOR 2 |
| Lsat_s002.g0185.t1 | GEO13458P1 |
| Lsat_s002.g0186.t1 | SUA5 |
| Lsat_s002.g0187.t1 | COLLAGEN ALPHA |
| Lsat_s002.g0188.t1 | UNCHARACTERIZED |
| Lsat_s002.g0189.t1 | UNCHARACTERIZED |
| Lsat_s002.g0190.t1 | IONOTROPIC GLUTAMATE RECEPTOR |
| Lsat_s002.g0191.t1 | COLLAGEN ALPHA |
| Lsat_s002.g0192.t1 | SPERMINE SYNTHASE |
| Lsat_s002.g0193.t1 | SPERMINE SYNTHASE |
| Lsat_s002.g0194.t1 | IP21249P |
| Lsat_s002.g0195.t1 | HEME OXYGENASE |
| Lsat_s002.g0196.t1 | HEME OXYGENASE |
| Lsat_s002.g0197.t1 | HEME OXYGENASE |
| Lsat_s002.g0198.t1 | HEME OXYGENASE |
| Lsat_s002.g0199.t1 | HEME OXYGENASE |
| Lsat_s002.g0200.t1 | CONNECTOR ENCHANCER OF KINASE SUPPRESSOR OF RAS |
| Lsat_s002.g0201.t1 | 30S/40S RIBOSOMAL PROTEIN S4 |
| Lsat_s002.g0202.t1 | ZINC FINGER PROTEIN |
| Lsat_s002.g0203.t1 | DENTIN MATRIX PROTEIN 4 PROTEIN FAM20 |
| Lsat_s002.g0204.t1 | SULFOTRANSFERASE SULT |
| Lsat_s002.g0205.t1 | ZINC FINGER C4H2 DOMAIN-CONTAINING PROTEIN |
| Lsat_s002.g0206.t1 | GUANYLATE CYCLASE SOLUBLE SUBUNIT BETA-2 |
| Lsat_s002.g0207.t1 | METHYLTRANSFERASE LIKE 7B |
| Lsat_s002.g0208.t1 | SULFOTRANSFERASE SULT |
| Lsat_s002.g0209.t1 | PROTEIN B, PUTATIVE-RELATED-RELATED |
