About Lamellibrachia satsuma

Lamellibrachia satsuma , also known as Satsuma tubeworm, is a vestimentiferan tube worm that was discovered near a hydrothermal vent in Kagoshima Bay, Kagoshima at the depth of only 82 m the shallowest depth record for a vestimentiferan. Its symbiotic sulfur oxidizer bacteria have been characterised as ε-Proteobacteria and γ-Proteobacteria. Subspecies have been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m depth.

Classification

Animalia (Kingdom); Annelida (Phylum); Polychaeta (Class); Sedentaria (Subclass); Canalipalpata (Infraclass); Sabellida (Order); Siboglinidae (Family); Lamellibrachia (Genus); Lamellibrachia satsuma (Species)

Original Name

Lamellibrachia satsuma Miura, 1997

Key Reference Paper

1. Miura T. Lamellibrachia satsuma, a new species of vestimentiferan worms (Annelida: Pogonophora) from a shallow hydrothermal vent in Kagoshima Bay, Japan[J]. Proceedings of the Biological Society of Washington, 1997, 110: 447-456. (Miura et al., 1997)

Distribution

The species has been later found associated with cold seeps at Hatsushima in Sagami Bay and at the Daini Tenryu Knoll in the Nankai Trough with specimens obtained at up to 1,170 m (3,840 ft) depth.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Lamellibrachia satsumaAnnelidatube wormsCold seep110Kagoshima Bay, Kagoshima, Japan (31_39.756ʹN, 130_48.050ʹE)104711

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
ASM3323900v1736MbScaffold2023BSQZ01Atmosphere and Ocean Research Institute, The University of TokyoPRJDB1419995.50 8,074/6,60040.2-27,979

References
TitleJournalPubmed ID
Genomic and transcriptomic analyses illuminate the molecular basis of the unique lifestyle of a tubeworm, Lamellibrachia satsumaDNA Research37358253

Gene Information

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Gene IDDescription
Lsat_s001.g0941.t1METALLOPEPTIDASE M28 FAMILY MEMBER
Lsat_s001.g0942.t1ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED
Lsat_s001.g0943.t1LEUCINE-RICH REPEAT-CONTAINING PROTEIN 42
Lsat_s001.g0944.t1TRANSMEMBRANE PROTEIN KIAA1109
Lsat_s001.g0945.t1ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Lsat_s001.g0946.t1INTRAFLAGELLAR TRANSPORT PROTEIN 25 HOMOLOG
Lsat_s001.g0947.t1TRANSCRIPTIONAL ACTIVATOR CUBITUS INTERRUPTUS
Lsat_s001.g0948.t1DISCS LARGE
Lsat_s001.g0949.t1UNCHARACTERIZED
Lsat_s001.g0950.t1RFX TRANSCRIPTION FACTOR FAMILY
Lsat_s001.g0951.t1DNA CYTOSINE-5- -METHYLTRANSFERASE 3-RELATED
Lsat_s001.g0952.t1DISCS LARGE
Lsat_s001.g0953.t1RHO GTPASE-ACTIVATING PROTEIN 100F
Lsat_s001.g0954.t1RRNA PROCESSING PROTEIN EBNA1-BINDING PROTEIN-RELATED
Lsat_s001.g0955.t1PROTEIN FAM183B
Lsat_s001.g0956.t1PROTEIN FAM183B
Lsat_s001.g0957.t1CELL DIVISION CYCLE 20 CDC20 FIZZY -RELATED
Lsat_s001.g0958.t1T-CELL ACUTE LYMPHOCYTIC LEUKEMIA/STEM CELL LEUKEMIA-RELATED
Lsat_s001.g0959.t1ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6
Lsat_s001.g0960.t1-
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