About Gigantidas platifrons

Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Gigantidas platifronsMolluscacold seep mussel, Bathymodiolus platifronsCold seep/Hydrothermal vent1,122-1,430methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea2830794

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
Bpl_v1.01.64GbScaffold2017MJUT01Hong Kong University of Science and TechnologyPRJNA32854296.30%33,584

References
TitleJournalPubmed ID
Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomesNature Ecology & Evolution28812709

Gene Information

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Gene IDDescription
Bpl_scaf_4833-2.23
Bpl_scaf_4833-2.25SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE
Bpl_scaf_4833-2.36ALANINE--GLYOXYLATE AMINOTRANSFERASE 2, MITOCHONDRIAL
Bpl_scaf_48336-0.15ALPHA-AMYLASE
Bpl_scaf_48337-0.1FERREDOXIN-RELATED
Bpl_scaf_48337-1.2UDP-D-XYLOSE:L-FUCOSE ALPHA-1,3-D-XYLOSYLTRANSFERASE-RELATED
Bpl_scaf_48337-1.3G-PROTEIN COUPLED RECEPTOR
Bpl_scaf_48337-1.9MONOCARBOXYLATE TRANSPORTER
Bpl_scaf_48337-2.0
Bpl_scaf_48337-2.10UNCHARACTERIZED
Bpl_scaf_48337-2.13G-PROTEIN COUPLED RECEPTOR
Bpl_scaf_48337-2.4
Bpl_scaf_48337-2.9CALCIUM BINDING PROTEINS
Bpl_scaf_48337-3.3CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5
Bpl_scaf_48337-4.0
Bpl_scaf_48337-4.18
Bpl_scaf_48337-4.4CALCIUM BINDING PROTEINS
Bpl_scaf_48337-4.7GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 1
Bpl_scaf_48360-0.28
Bpl_scaf_48360-0.3ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED
Bpl_scaf_48360-3.4DIACYLGLYCEROL KINASE
Bpl_scaf_48360-4.1ADP RIBOSYLATION FACTOR-RELATED
Bpl_scaf_48360-4.10NUCLEAR RESPIRATORY FACTOR 1
Bpl_scaf_48370-0.4
Bpl_scaf_48381-0.11MULTIPLE EPIDERMAL GROWTH FACTOR-LIKE DOMAINS PROTEIN
Bpl_scaf_48381-0.12RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE
Bpl_scaf_48391-0.24MUCIN-22
Bpl_scaf_48391-0.7PROTEIN CBG12474
Bpl_scaf_48401-0.15CEREBELLIN-RELATED
Bpl_scaf_48405-0.0TRANSIENT RECEPTOR POTENTIAL CATION CHANNEL, SUBFAMILY M, MEMBER 6
Bpl_scaf_48405-0.4
Bpl_scaf_48418-0.0
Bpl_scaf_48418-0.5
Bpl_scaf_4842-0.0
Bpl_scaf_48428-0.0
Bpl_scaf_48428-0.1
Bpl_scaf_4843-0.0
Bpl_scaf_48431-0.0ABHYDROLASE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_4844-0.5TATA-BINDING PROTEIN-ASSOCIATED FACTOR 172
Bpl_scaf_4844-0.8DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
Bpl_scaf_4844-1.11DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
Bpl_scaf_4844-1.5
Bpl_scaf_4844-2.10
Bpl_scaf_4844-2.18HELICASE WITH DEATH DOMAIN-RELATED
Bpl_scaf_4844-2.29
Bpl_scaf_4844-2.33
Bpl_scaf_4844-2.7ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Bpl_scaf_4844-2.8PULMONARY SURFACTANT-ASSOCIATED PROTEIN A
Bpl_scaf_48448-0.1
Bpl_scaf_48461-0.2
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