Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_48198-0.0 | |
| Bpl_scaf_48198-0.4 | |
| Bpl_scaf_48198-10.2 | SERYL-TRNA SYNTHETASE |
| Bpl_scaf_48198-10.3 | 39S RIBOSOMAL PROTEIN L14, MITOCHONDRIAL |
| Bpl_scaf_48198-11.10 | |
| Bpl_scaf_48198-11.11 | GH11602P |
| Bpl_scaf_48198-11.9 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_48198-12.18 | SI:CH211-201H21.5-RELATED |
| Bpl_scaf_48198-12.19 | TETRATRICOPEPTIDE REPEAT PROTEIN 19 |
| Bpl_scaf_48198-12.2 | |
| Bpl_scaf_48198-12.32 | TUDOR DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_48198-12.34 | ZINC TRANSPORTER SLC39A7 HISTIDINE-RICH MEMBRANE PROTEIN KE4 |
| Bpl_scaf_48198-14.0 | PR DOMAIN ZINC FINGER PROTEIN |
| Bpl_scaf_48198-14.1 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_48198-15.8 | NEMITIN (NEURONAL ENRICHED MAP INTERACTING PROTEIN) HOMOLOG |
| Bpl_scaf_48198-15.9 | |
| Bpl_scaf_48198-16.3 | SOLUTE CARRIER FAMILY 25 |
| Bpl_scaf_48198-16.4 | FCH AND DOUBLE SH3 DOMAINS PROTEIN |
| Bpl_scaf_48198-17.0 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_48198-17.11 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_48198-17.4 | |
| Bpl_scaf_48198-17.7 | |
| Bpl_scaf_48198-18.3 | |
| Bpl_scaf_48198-18.8 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_48198-18.9 | G-PROTEIN COUPLED RECEPTOR |
| Bpl_scaf_48198-19.16 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_48198-19.17 | |
| Bpl_scaf_48198-19.20 | |
| Bpl_scaf_48198-19.8 | BONUS, ISOFORM C-RELATED |
| Bpl_scaf_48198-2.4 | RETINOBLASTOMA-BINDING PROTEIN 6 |
| Bpl_scaf_48198-2.6 | DNA2/NAM7 HELICASE FAMILY |
| Bpl_scaf_48198-2.7 | RETINOBLASTOMA-BINDING PROTEIN 6 |
| Bpl_scaf_48198-3.10 | PLEXIN |
| Bpl_scaf_48198-4.0 | |
| Bpl_scaf_48198-4.7 | SRCR DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_48198-4.9 | METHYLTRANSFERASE-LIKE PROTEIN 24 |
| Bpl_scaf_48198-5.5 | NEUROTRANSMITTER GATED ION CHANNEL |
| Bpl_scaf_48198-5.8 | NEUROTRANSMITTER GATED ION CHANNEL |
| Bpl_scaf_48198-6.4 | FLOTILLIN-RELATED |
| Bpl_scaf_48198-7.0 | |
| Bpl_scaf_48198-8.16 | PROPERDIN |
| Bpl_scaf_48198-8.17 | IGGFC_BINDING DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_48198-9.3 | |
| Bpl_scaf_48198-9.4 | |
| Bpl_scaf_4822-0.18 | PEFLIN |
| Bpl_scaf_4822-0.8 | 2-OXOGLUTARATE DEHYDROGENASE |
| Bpl_scaf_4822-1.1 | |
| Bpl_scaf_4822-1.6 | - |
| Bpl_scaf_4822-1.7 | BRAIN-SPECIFIC ANGIOGENESIS INHIBITOR 1-ASSOCIATED PROTEIN 2 |
| Bpl_scaf_4822-2.10 |
