Gigantidas platifrons is a deep-sea mussel that is common in hydrothermal vents and methane seeps in the Western Pacific Ocean. It is found in hydrothermal vents in the Okinawa Trough and cold seeps in Sagami Bay (Japan) and the South China Sea. Morever, it harbours methane-oxidizing bacteria in its gill, which help to transfer methane into material and energy to help it to thrive in such environments.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Gigantidas platifrons | Mollusca | cold seep mussel, Bathymodiolus platifrons | Cold seep/Hydrothermal vent | 1,122-1,430 | methane seep (22° 06.921′ N, 119° 17.131′ E) in the South China Sea | 2830794 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Bpl_v1.0 | 1.64Gb | Scaffold | 2017 | MJUT01 | Hong Kong University of Science and Technology | PRJNA328542 | 96.30% | 33,584 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Adaptation to deep-sea chemosynthetic environments as revealed by mussel genomes | Nature Ecology & Evolution | 28812709 |
| Gene ID | Description |
|---|---|
| Bpl_scaf_48262-11.10 | MORN REPEAT-CONTAINING PROTEIN 5 |
| Bpl_scaf_48262-11.7 | BASIGIN RELATED |
| Bpl_scaf_48262-2.13 | |
| Bpl_scaf_48262-2.15 | YY1 ASSOCIATED PROTEIN-RELATED |
| Bpl_scaf_48262-2.16 | YY1 ASSOCIATED PROTEIN-RELATED |
| Bpl_scaf_48262-2.18 | GDOWN1 |
| Bpl_scaf_48262-3.17 | MESENCHYME-SPECIFIC CELL SURFACE GLYCOPROTEIN |
| Bpl_scaf_48262-3.18 | |
| Bpl_scaf_48262-3.8 | BASIC HELIX-LOOP-HELIX ZIP TRANSCRIPTION FACTOR |
| Bpl_scaf_48262-4.6 | MIP31509P |
| Bpl_scaf_48262-4.9 | |
| Bpl_scaf_48262-5.14 | AGAP011099-PA |
| Bpl_scaf_48262-5.7 | OLIGORIBONUCLEASE, MITOCHONDRIAL |
| Bpl_scaf_48262-6.11 | PEPTIDE N-GLYCANASE PNGASE -RELATED |
| Bpl_scaf_48262-6.12 | PEROXISOMAL SARCOSINE OXIDASE |
| Bpl_scaf_48262-6.21 | PEROXISOMAL SARCOSINE OXIDASE |
| Bpl_scaf_48262-6.9 | PEROXISOMAL SARCOSINE OXIDASE |
| Bpl_scaf_48262-7.10 | P300 TRANSCRIPTIONAL COFACTOR JMY-RELATED |
| Bpl_scaf_48262-7.15 | RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN |
| Bpl_scaf_48262-7.9 | CREB-REGULATED TRANSCRIPTION COACTIVATOR |
| Bpl_scaf_48262-8.6 | CREB-REGULATED TRANSCRIPTION COACTIVATOR |
| Bpl_scaf_48262-8.7 | MUTATED IN BLADDER CANCER 1 |
| Bpl_scaf_48262-9.1 | UNCHARACTERIZED |
| Bpl_scaf_48262-9.10 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN |
| Bpl_scaf_48262-9.19 | UNCHARACTERIZED |
| Bpl_scaf_48262-9.2 | |
| Bpl_scaf_48262-9.9 | 39S RIBOSOMAL PROTEIN L43 |
| Bpl_scaf_48274-0.3 | CARBONIC ANHYDRASE |
| Bpl_scaf_48281-0.3 | |
| Bpl_scaf_48295-0.0 | |
| Bpl_scaf_48304-0.3 | RAN BINDING PROTEIN 9-RELATED |
| Bpl_scaf_48313-0.0 | |
| Bpl_scaf_48318-0.5 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Bpl_scaf_4832-0.2 | NOTCH LIGAND FAMILY MEMBER |
| Bpl_scaf_48327-1.1 | |
| Bpl_scaf_48327-1.4 | |
| Bpl_scaf_48327-2.16 | UNCHARACTERIZED |
| Bpl_scaf_48327-2.17 | CARBOHYDRATE SULFOTRANSFERASE |
| Bpl_scaf_48327-2.19 | N-ACETYLTRANSFERASE-RELATED |
| Bpl_scaf_48327-2.20 | CAT EYE SYNDROME CRITICAL REGION PROTEIN 6 |
| Bpl_scaf_48327-2.4 | CARBOHYDRATE SULFOTRANSFERASE |
| Bpl_scaf_48327-2.5 | N-ACETYLTRANSFERASE-RELATED |
| Bpl_scaf_48327-3.11 | SI:CH1073-475A24.1 |
| Bpl_scaf_48327-3.7 | N-ACETYLTRANSFERASE-RELATED |
| Bpl_scaf_48327-4.18 | |
| Bpl_scaf_48327-4.4 | |
| Bpl_scaf_48327-4.5 | |
| Bpl_scaf_4833-1.0 | FMRFAMIDE RECEPTOR-RELATED |
| Bpl_scaf_4833-2.21 | ATP-DEPENDENT RNA HELICASE |
| Bpl_scaf_4833-2.22 | APOPTOTIC CHROMATIN CONDENSATION INDUCER IN THE NUCLEUS |
